miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24251 5' -58.5 NC_005263.2 + 895 0.71 0.27525
Target:  5'- uCAGcgCGGcgGUCGCCGcCGGCGGg- -3'
miRNA:   3'- -GUCuaGCCugUAGCGGCaGCCGCCgu -5'
24251 5' -58.5 NC_005263.2 + 1624 0.79 0.077459
Target:  5'- cCGGGUCGaACG-CGUCGUCGGCGGCGu -3'
miRNA:   3'- -GUCUAGCcUGUaGCGGCAGCCGCCGU- -5'
24251 5' -58.5 NC_005263.2 + 3386 0.75 0.139006
Target:  5'- -cGA-CGGGCGUCGCCGUCGuuGCgGGCAc -3'
miRNA:   3'- guCUaGCCUGUAGCGGCAGC--CG-CCGU- -5'
24251 5' -58.5 NC_005263.2 + 3492 0.68 0.402959
Target:  5'- gCAGcgaGUCGGGCAagUUGUCG-CGcGCGGCAa -3'
miRNA:   3'- -GUC---UAGCCUGU--AGCGGCaGC-CGCCGU- -5'
24251 5' -58.5 NC_005263.2 + 4676 0.72 0.213204
Target:  5'- gCGGGUCuuucgucaGGAUcgUGCCGUCGGCGaGCu -3'
miRNA:   3'- -GUCUAG--------CCUGuaGCGGCAGCCGC-CGu -5'
24251 5' -58.5 NC_005263.2 + 5590 0.66 0.509904
Target:  5'- gCGGccGUCGGGCAUCcgcacggcgagGCCGU--GCGGCAg -3'
miRNA:   3'- -GUC--UAGCCUGUAG-----------CGGCAgcCGCCGU- -5'
24251 5' -58.5 NC_005263.2 + 6786 0.68 0.421357
Target:  5'- --aAUCGGugA-CGCCGgcgGGCGGCGu -3'
miRNA:   3'- gucUAGCCugUaGCGGCag-CCGCCGU- -5'
24251 5' -58.5 NC_005263.2 + 8104 1.08 0.000539
Target:  5'- uCAGAUCGGACAUCGCCGUCGGCGGCAg -3'
miRNA:   3'- -GUCUAGCCUGUAGCGGCAGCCGCCGU- -5'
24251 5' -58.5 NC_005263.2 + 8713 0.66 0.530663
Target:  5'- aCAGGUCGGccgcgucCAUCGCguacUCGGCGaGCGg -3'
miRNA:   3'- -GUCUAGCCu------GUAGCGgc--AGCCGC-CGU- -5'
24251 5' -58.5 NC_005263.2 + 12653 0.69 0.334676
Target:  5'- --cGUC-GAUAUCGUCGUCGGcCGGCGc -3'
miRNA:   3'- gucUAGcCUGUAGCGGCAGCC-GCCGU- -5'
24251 5' -58.5 NC_005263.2 + 15942 0.68 0.385078
Target:  5'- -cGAUCGGGCgcauGUCGCaCGacacgCGGCGGaCAa -3'
miRNA:   3'- guCUAGCCUG----UAGCG-GCa----GCCGCC-GU- -5'
24251 5' -58.5 NC_005263.2 + 16360 0.71 0.24258
Target:  5'- aAGcgCGcGGCcgCGUCGcUCGGCGGCGg -3'
miRNA:   3'- gUCuaGC-CUGuaGCGGC-AGCCGCCGU- -5'
24251 5' -58.5 NC_005263.2 + 17152 0.67 0.479432
Target:  5'- -cGGUC-GACGUCGCgGuguUCGGCuGGCAg -3'
miRNA:   3'- guCUAGcCUGUAGCGgC---AGCCG-CCGU- -5'
24251 5' -58.5 NC_005263.2 + 17626 0.7 0.318212
Target:  5'- gCGGGUCGcGCAUCGaugcguuCCGUCGGCgcuacGGCAu -3'
miRNA:   3'- -GUCUAGCcUGUAGC-------GGCAGCCG-----CCGU- -5'
24251 5' -58.5 NC_005263.2 + 18157 0.7 0.303848
Target:  5'- aCAGcuAUCGG-CggCGgCGUUGGCGGCAu -3'
miRNA:   3'- -GUC--UAGCCuGuaGCgGCAGCCGCCGU- -5'
24251 5' -58.5 NC_005263.2 + 18748 0.67 0.440252
Target:  5'- cCAGAUCGG-CG-CGaUCGUaGGCGGCGc -3'
miRNA:   3'- -GUCUAGCCuGUaGC-GGCAgCCGCCGU- -5'
24251 5' -58.5 NC_005263.2 + 19371 0.68 0.393952
Target:  5'- cCGGAU-GcGCAUUGCCGucagccUCGGCGGCGc -3'
miRNA:   3'- -GUCUAgCcUGUAGCGGC------AGCCGCCGU- -5'
24251 5' -58.5 NC_005263.2 + 20966 0.76 0.121175
Target:  5'- --uGUCGGACAUCGCCGacgCGGCuGCGc -3'
miRNA:   3'- gucUAGCCUGUAGCGGCa--GCCGcCGU- -5'
24251 5' -58.5 NC_005263.2 + 23295 0.67 0.440252
Target:  5'- -----gGGACAggCGCCGUuuuaCGGCGGCc -3'
miRNA:   3'- gucuagCCUGUa-GCGGCA----GCCGCCGu -5'
24251 5' -58.5 NC_005263.2 + 23911 0.66 0.489494
Target:  5'- cCAGGUCGcGcGCAUCGCU--UGGUGGCu -3'
miRNA:   3'- -GUCUAGC-C-UGUAGCGGcaGCCGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.