Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24253 | 5' | -56.9 | NC_005263.2 | + | 30214 | 0.66 | 0.54279 |
Target: 5'- aUCGGcgCGC-CGCC-GGUCGAcugaucguuCGCGg -3' miRNA: 3'- aAGUCaaGCGaGCGGuCCAGCU---------GCGC- -5' |
|||||||
24253 | 5' | -56.9 | NC_005263.2 | + | 31151 | 0.67 | 0.500455 |
Target: 5'- -gCGGUaCGcCUUGCCGuGUCGGCGCa -3' miRNA: 3'- aaGUCAaGC-GAGCGGUcCAGCUGCGc -5' |
|||||||
24253 | 5' | -56.9 | NC_005263.2 | + | 31737 | 0.67 | 0.51091 |
Target: 5'- aUCAGgcCGC-CGCCGaG-CGACGCGg -3' miRNA: 3'- aAGUCaaGCGaGCGGUcCaGCUGCGC- -5' |
|||||||
24253 | 5' | -56.9 | NC_005263.2 | + | 40835 | 0.68 | 0.479837 |
Target: 5'- gUCAugUCGCUCGCCccGUCGAUGg- -3' miRNA: 3'- aAGUcaAGCGAGCGGucCAGCUGCgc -5' |
|||||||
24253 | 5' | -56.9 | NC_005263.2 | + | 46835 | 0.67 | 0.532084 |
Target: 5'- ------aCGCgCGCCAGG-CGGCGCGc -3' miRNA: 3'- aagucaaGCGaGCGGUCCaGCUGCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home