Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24258 | 3' | -58.1 | NC_005263.2 | + | 35959 | 0.69 | 0.35175 |
Target: 5'- cGCUgcgUGCaaggcGCUCGACCGCcuggaGCGcGCGu -3' miRNA: 3'- -CGAa--ACGga---CGAGCUGGCGa----CGC-CGC- -5' |
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24258 | 3' | -58.1 | NC_005263.2 | + | 15475 | 0.69 | 0.343456 |
Target: 5'- -aUUUGCCgUGCUgCGGCgGC-GCGGUGa -3' miRNA: 3'- cgAAACGG-ACGA-GCUGgCGaCGCCGC- -5' |
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24258 | 3' | -58.1 | NC_005263.2 | + | 3754 | 0.69 | 0.335303 |
Target: 5'- ----cGCCUGCUCG-CgCGCgggcaGCGGCa -3' miRNA: 3'- cgaaaCGGACGAGCuG-GCGa----CGCCGc -5' |
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24258 | 3' | -58.1 | NC_005263.2 | + | 5483 | 0.69 | 0.335303 |
Target: 5'- uGCUUcGUgCUGCUCGACaggggGC-GCGGCGa -3' miRNA: 3'- -CGAAaCG-GACGAGCUGg----CGaCGCCGC- -5' |
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24258 | 3' | -58.1 | NC_005263.2 | + | 12207 | 0.7 | 0.30262 |
Target: 5'- ----cGCCUGUgucUCGACCGCaccgacaucaacGCGGCGa -3' miRNA: 3'- cgaaaCGGACG---AGCUGGCGa-----------CGCCGC- -5' |
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24258 | 3' | -58.1 | NC_005263.2 | + | 17386 | 0.7 | 0.296679 |
Target: 5'- aGCUgucUGCCgGCgCGGCCGCgcgccugGCgGGCGg -3' miRNA: 3'- -CGAa--ACGGaCGaGCUGGCGa------CG-CCGC- -5' |
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24258 | 3' | -58.1 | NC_005263.2 | + | 3304 | 0.7 | 0.296679 |
Target: 5'- --cUUGCCUGggcgCGGCCGC-GCGGUGu -3' miRNA: 3'- cgaAACGGACga--GCUGGCGaCGCCGC- -5' |
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24258 | 3' | -58.1 | NC_005263.2 | + | 28216 | 0.71 | 0.275211 |
Target: 5'- aGCUguuggugGCCUGCaUCGGCCGCgcucGCcGCGc -3' miRNA: 3'- -CGAaa-----CGGACG-AGCUGGCGa---CGcCGC- -5' |
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24258 | 3' | -58.1 | NC_005263.2 | + | 37924 | 0.71 | 0.268337 |
Target: 5'- gGCUUcgGCCUGCUCGcgauUCGCgcucuCGGCGa -3' miRNA: 3'- -CGAAa-CGGACGAGCu---GGCGac---GCCGC- -5' |
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24258 | 3' | -58.1 | NC_005263.2 | + | 7485 | 0.71 | 0.261601 |
Target: 5'- cGCUUgGCCucgaagUGCcgCGcACCGCUGaCGGCGa -3' miRNA: 3'- -CGAAaCGG------ACGa-GC-UGGCGAC-GCCGC- -5' |
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24258 | 3' | -58.1 | NC_005263.2 | + | 26192 | 0.71 | 0.248544 |
Target: 5'- uGCg--GCC-GCgcggCGGCCGCgcgaUGCGGCGg -3' miRNA: 3'- -CGaaaCGGaCGa---GCUGGCG----ACGCCGC- -5' |
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24258 | 3' | -58.1 | NC_005263.2 | + | 44595 | 0.71 | 0.247906 |
Target: 5'- cGCUgaagaagaUUGCCgcgcgcgacaacuUGCcCGACuCGCUGCGGCa -3' miRNA: 3'- -CGA--------AACGG-------------ACGaGCUG-GCGACGCCGc -5' |
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24258 | 3' | -58.1 | NC_005263.2 | + | 18907 | 0.73 | 0.181197 |
Target: 5'- cGCgccgGCCUGCgucgagcgUGACCGC-GCGGCa -3' miRNA: 3'- -CGaaa-CGGACGa-------GCUGGCGaCGCCGc -5' |
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24258 | 3' | -58.1 | NC_005263.2 | + | 29490 | 0.73 | 0.181197 |
Target: 5'- --gUUGCCaccUGCcgCGaacGCCGCUGCGGCGu -3' miRNA: 3'- cgaAACGG---ACGa-GC---UGGCGACGCCGC- -5' |
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24258 | 3' | -58.1 | NC_005263.2 | + | 22500 | 0.73 | 0.181197 |
Target: 5'- gGCg--GCCggcggcgGUUCGGCgGCUGCGGCc -3' miRNA: 3'- -CGaaaCGGa------CGAGCUGgCGACGCCGc -5' |
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24258 | 3' | -58.1 | NC_005263.2 | + | 33972 | 0.74 | 0.15398 |
Target: 5'- gGCg--GCCgcGCU-GGCCGCUGCGGCu -3' miRNA: 3'- -CGaaaCGGa-CGAgCUGGCGACGCCGc -5' |
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24258 | 3' | -58.1 | NC_005263.2 | + | 44749 | 0.75 | 0.134189 |
Target: 5'- cGCacUGUCUggucGCUCGACCGCgcGCGGCGc -3' miRNA: 3'- -CGaaACGGA----CGAGCUGGCGa-CGCCGC- -5' |
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24258 | 3' | -58.1 | NC_005263.2 | + | 21443 | 0.75 | 0.133079 |
Target: 5'- ----cGCCUGCcCGAauccggaagcgccaCCGCUGCGGCGc -3' miRNA: 3'- cgaaaCGGACGaGCU--------------GGCGACGCCGC- -5' |
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24258 | 3' | -58.1 | NC_005263.2 | + | 8820 | 0.75 | 0.130522 |
Target: 5'- ----cGCCUGC-CGGCCGCU-CGGCGu -3' miRNA: 3'- cgaaaCGGACGaGCUGGCGAcGCCGC- -5' |
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24258 | 3' | -58.1 | NC_005263.2 | + | 7118 | 0.79 | 0.076371 |
Target: 5'- cGUUUcGCCUGCcgugCGACCGaCUGUGGCGu -3' miRNA: 3'- -CGAAaCGGACGa---GCUGGC-GACGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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