miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24258 5' -57 NC_005263.2 + 30894 0.66 0.545015
Target:  5'- aUUCGCCuGCAGCGugcacgaGUCGAgCGCGGc -3'
miRNA:   3'- -AAGCGG-UGUCGUca-----CAGCUaGCGCCa -5'
24258 5' -57 NC_005263.2 + 16122 0.66 0.523498
Target:  5'- -cCGCCACAGUccGGgca-GGUUGCGGUg -3'
miRNA:   3'- aaGCGGUGUCG--UCacagCUAGCGCCA- -5'
24258 5' -57 NC_005263.2 + 2281 0.67 0.491864
Target:  5'- gUUCGCCGuCGGCAG-GUCGugcgcCGUGGc -3'
miRNA:   3'- -AAGCGGU-GUCGUCaCAGCua---GCGCCa -5'
24258 5' -57 NC_005263.2 + 26652 0.67 0.491864
Target:  5'- -gCGCCGCAGCGGUGgCGcuUC-CGGa -3'
miRNA:   3'- aaGCGGUGUCGUCACaGCu-AGcGCCa -5'
24258 5' -57 NC_005263.2 + 18610 0.68 0.42182
Target:  5'- -aCGCCGCAGCGGcGU---UCGCGGc -3'
miRNA:   3'- aaGCGGUGUCGUCaCAgcuAGCGCCa -5'
24258 5' -57 NC_005263.2 + 3487 0.68 0.412309
Target:  5'- -cUGCCGCAGCgAGUcgggcaaguuGUCGcgCGCGGc -3'
miRNA:   3'- aaGCGGUGUCG-UCA----------CAGCuaGCGCCa -5'
24258 5' -57 NC_005263.2 + 6794 0.69 0.39369
Target:  5'- gUCGCCGCccuucGUcuugacgccuucGGUGUCGAUCuGCGGg -3'
miRNA:   3'- aAGCGGUGu----CG------------UCACAGCUAG-CGCCa -5'
24258 5' -57 NC_005263.2 + 41658 0.69 0.39369
Target:  5'- cUCGCUcgugcucugGCGGCAGaucGUCGggCGCGGa -3'
miRNA:   3'- aAGCGG---------UGUCGUCa--CAGCuaGCGCCa -5'
24258 5' -57 NC_005263.2 + 31003 0.69 0.383685
Target:  5'- -aCGCCagaucguGCAGCAGUGcggCGAggCGCGGc -3'
miRNA:   3'- aaGCGG-------UGUCGUCACa--GCUa-GCGCCa -5'
24258 5' -57 NC_005263.2 + 32446 0.69 0.375625
Target:  5'- -aCGCCAagcGCAGUcGUCGAUC-CGGUu -3'
miRNA:   3'- aaGCGGUgu-CGUCA-CAGCUAGcGCCA- -5'
24258 5' -57 NC_005263.2 + 30418 0.7 0.316933
Target:  5'- --gGCUGCAGCAG-GUCGGU-GCGGUc -3'
miRNA:   3'- aagCGGUGUCGUCaCAGCUAgCGCCA- -5'
24258 5' -57 NC_005263.2 + 28943 0.7 0.308363
Target:  5'- cUCGCCACGGCccaugcgGUCGGaucggugUCGCGGa -3'
miRNA:   3'- aAGCGGUGUCGuca----CAGCU-------AGCGCCa -5'
24258 5' -57 NC_005263.2 + 35489 0.71 0.272343
Target:  5'- gUCGUCGCAGuUAGcGUCG-UCGCGGUc -3'
miRNA:   3'- aAGCGGUGUC-GUCaCAGCuAGCGCCA- -5'
24258 5' -57 NC_005263.2 + 22359 0.72 0.257971
Target:  5'- -aCGCgGCGGCAagaaagcGUGUCGAUCgGCGGc -3'
miRNA:   3'- aaGCGgUGUCGU-------CACAGCUAG-CGCCa -5'
24258 5' -57 NC_005263.2 + 7354 0.72 0.239151
Target:  5'- cUUGCCGCcGcCGGUGaCGAUCGCGGc -3'
miRNA:   3'- aAGCGGUGuC-GUCACaGCUAGCGCCa -5'
24258 5' -57 NC_005263.2 + 9737 1.05 0.000901
Target:  5'- gUUCGCCACAGCAGUGUCGAUCGCGGUg -3'
miRNA:   3'- -AAGCGGUGUCGUCACAGCUAGCGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.