miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24260 3' -59.4 NC_005263.2 + 23394 0.66 0.4503
Target:  5'- uUGCCGccUGCGcCGCCCGgcaCGUuCGGCg -3'
miRNA:   3'- cGCGGCcuACGC-GCGGGCa--GCA-GUUG- -5'
24260 3' -59.4 NC_005263.2 + 39094 0.67 0.444551
Target:  5'- -aGCCGGAcgGCgaguacgcgcgacucGUGCgCCGUgCGUCGGCg -3'
miRNA:   3'- cgCGGCCUa-CG---------------CGCG-GGCA-GCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 44865 0.67 0.440741
Target:  5'- uGCGCgGcGAUcGCGCcuaccugucgucGCCCGagGUCGGCc -3'
miRNA:   3'- -CGCGgC-CUA-CGCG------------CGGGCagCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 17808 0.67 0.440741
Target:  5'- aCGCCGGc--CGCGCCCGgcgcUGUCGcggACa -3'
miRNA:   3'- cGCGGCCuacGCGCGGGCa---GCAGU---UG- -5'
24260 3' -59.4 NC_005263.2 + 16644 0.67 0.440741
Target:  5'- gGCGCCGaacuUGCagGCGCUcgCGUCGUuCGGCg -3'
miRNA:   3'- -CGCGGCcu--ACG--CGCGG--GCAGCA-GUUG- -5'
24260 3' -59.4 NC_005263.2 + 6365 0.67 0.440741
Target:  5'- cGCGCCGugccgcccGAaguUGC-CGCCCG-CGUCGAg -3'
miRNA:   3'- -CGCGGC--------CU---ACGcGCGGGCaGCAGUUg -5'
24260 3' -59.4 NC_005263.2 + 34040 0.67 0.431298
Target:  5'- uGgGCCGGcgcgGCGCGCUCaaugCGcUCGACg -3'
miRNA:   3'- -CgCGGCCua--CGCGCGGGca--GC-AGUUG- -5'
24260 3' -59.4 NC_005263.2 + 19042 0.67 0.431298
Target:  5'- cGCGCCGua-GCGgGCCgCGUCGUg--- -3'
miRNA:   3'- -CGCGGCcuaCGCgCGG-GCAGCAguug -5'
24260 3' -59.4 NC_005263.2 + 19367 0.67 0.431298
Target:  5'- aGCaCCGGAUGCGCa-UUGcCGUCAGCc -3'
miRNA:   3'- -CGcGGCCUACGCGcgGGCaGCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 12039 0.67 0.431298
Target:  5'- uGCGCCGGuacaucGCuucCGUCUGUCgGUCGACc -3'
miRNA:   3'- -CGCGGCCua----CGc--GCGGGCAG-CAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 36214 0.67 0.421975
Target:  5'- aGCGCgCaGgcGCccgGCGCCgCGUCGUCAGa -3'
miRNA:   3'- -CGCG-GcCuaCG---CGCGG-GCAGCAGUUg -5'
24260 3' -59.4 NC_005263.2 + 19062 0.67 0.421975
Target:  5'- cGCGCCGcGcggccUGCGCGCgCUGgugCGUCuuGCa -3'
miRNA:   3'- -CGCGGC-Cu----ACGCGCG-GGCa--GCAGu-UG- -5'
24260 3' -59.4 NC_005263.2 + 26499 0.67 0.421049
Target:  5'- uGCGCCuuGAUGUaacuguuGCGCgCGgCGUCGACg -3'
miRNA:   3'- -CGCGGc-CUACG-------CGCGgGCaGCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 22182 0.67 0.417359
Target:  5'- aGCGCCGGGcgaaccggugcugGCGUgGCCCGgggcauuUCGUCGcgACg -3'
miRNA:   3'- -CGCGGCCUa------------CGCG-CGGGC-------AGCAGU--UG- -5'
24260 3' -59.4 NC_005263.2 + 23900 0.67 0.412773
Target:  5'- cGCGCuCGuGA-GCGCGCCCGcgagCGU-GACc -3'
miRNA:   3'- -CGCG-GC-CUaCGCGCGGGCa---GCAgUUG- -5'
24260 3' -59.4 NC_005263.2 + 29055 0.67 0.403697
Target:  5'- -gGCCGcGcgGCGCGUCC-UCGgggCGGCg -3'
miRNA:   3'- cgCGGC-CuaCGCGCGGGcAGCa--GUUG- -5'
24260 3' -59.4 NC_005263.2 + 14433 0.67 0.403697
Target:  5'- uGCGCCaaGAUuCGCGCCCG-CaUCGACu -3'
miRNA:   3'- -CGCGGc-CUAcGCGCGGGCaGcAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 9863 0.67 0.398313
Target:  5'- -gGCCGGAuucagcucguuguccUcgGCGCuuucauGCUCGUCGUCGGCg -3'
miRNA:   3'- cgCGGCCU---------------A--CGCG------CGGGCAGCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 29507 0.67 0.394748
Target:  5'- aCGCCGc-UGCgGCGUCCGUCGgcgcgcCAGCa -3'
miRNA:   3'- cGCGGCcuACG-CGCGGGCAGCa-----GUUG- -5'
24260 3' -59.4 NC_005263.2 + 10869 0.67 0.394748
Target:  5'- cGCGgCGGAacucgGCaccgGCGCgCGUCGUgAGCg -3'
miRNA:   3'- -CGCgGCCUa----CG----CGCGgGCAGCAgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.