miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24261 3' -54.4 NC_005263.2 + 41419 0.66 0.709921
Target:  5'- cGCAAGcacuucAUGUGGuUCGCggugaacaucgaGCACGCGCAUa -3'
miRNA:   3'- -UGUUC------UACGUC-AGCG------------CGUGCGCGUAc -5'
24261 3' -54.4 NC_005263.2 + 6630 0.66 0.709921
Target:  5'- gGCGcGGUcgaGCAGUCGCGCgucggucgcuucACGUGCGg- -3'
miRNA:   3'- -UGUuCUA---CGUCAGCGCG------------UGCGCGUac -5'
24261 3' -54.4 NC_005263.2 + 29032 0.66 0.69884
Target:  5'- uGCAAGAcGCAccagcgCGCGCAggcCGCGCGg- -3'
miRNA:   3'- -UGUUCUaCGUca----GCGCGU---GCGCGUac -5'
24261 3' -54.4 NC_005263.2 + 33669 0.66 0.68769
Target:  5'- -aAAGAgGCGcgCGCGCACGCcgucGCAUGg -3'
miRNA:   3'- ugUUCUaCGUcaGCGCGUGCG----CGUAC- -5'
24261 3' -54.4 NC_005263.2 + 33325 0.66 0.665233
Target:  5'- gGCAAGAgGUAGgCGUGCGCGUcggGCAg- -3'
miRNA:   3'- -UGUUCUaCGUCaGCGCGUGCG---CGUac -5'
24261 3' -54.4 NC_005263.2 + 21958 0.66 0.665233
Target:  5'- gACAAcGAcGCAGgcaUGCuGCGCGCGCAg- -3'
miRNA:   3'- -UGUU-CUaCGUCa--GCG-CGUGCGCGUac -5'
24261 3' -54.4 NC_005263.2 + 13650 0.66 0.661851
Target:  5'- --uGGAUGaCGGUCGUGCGCaccgcgucgcgaauGCGCAg- -3'
miRNA:   3'- uguUCUAC-GUCAGCGCGUG--------------CGCGUac -5'
24261 3' -54.4 NC_005263.2 + 45294 0.67 0.65395
Target:  5'- cGCcGGAuuuUGUGGUCGCGUaugACGCGCu-- -3'
miRNA:   3'- -UGuUCU---ACGUCAGCGCG---UGCGCGuac -5'
24261 3' -54.4 NC_005263.2 + 41069 0.67 0.65395
Target:  5'- gGCGcGAUGCGccauccGUCG-GCGCGCGaCAUGc -3'
miRNA:   3'- -UGUuCUACGU------CAGCgCGUGCGC-GUAC- -5'
24261 3' -54.4 NC_005263.2 + 17298 0.67 0.642646
Target:  5'- cGCGAG--GCAGUCGC-CACgGCGCGc- -3'
miRNA:   3'- -UGUUCuaCGUCAGCGcGUG-CGCGUac -5'
24261 3' -54.4 NC_005263.2 + 21623 0.67 0.607585
Target:  5'- uCAAGgcGCAGUgcggcgaCGCGCG-GCGUAUGg -3'
miRNA:   3'- uGUUCuaCGUCA-------GCGCGUgCGCGUAC- -5'
24261 3' -54.4 NC_005263.2 + 44662 0.68 0.597433
Target:  5'- ---cGAUGC-GUCGCGCGCGC-CGa- -3'
miRNA:   3'- uguuCUACGuCAGCGCGUGCGcGUac -5'
24261 3' -54.4 NC_005263.2 + 963 0.68 0.574973
Target:  5'- gACGuAGcgGCGGUCGCcUGCGCGUcgGa -3'
miRNA:   3'- -UGU-UCuaCGUCAGCGcGUGCGCGuaC- -5'
24261 3' -54.4 NC_005263.2 + 36203 0.68 0.574973
Target:  5'- cACAGGAcGcCAG-CGCGCAgGCGCccGg -3'
miRNA:   3'- -UGUUCUaC-GUCaGCGCGUgCGCGuaC- -5'
24261 3' -54.4 NC_005263.2 + 3494 0.68 0.563814
Target:  5'- aGCGAGucggGCAaguuGUCGCGCGCG-GCAa- -3'
miRNA:   3'- -UGUUCua--CGU----CAGCGCGUGCgCGUac -5'
24261 3' -54.4 NC_005263.2 + 13354 0.68 0.552712
Target:  5'- uACAcAGAUGCGGgcggCGCGaaaCACGCGCc-- -3'
miRNA:   3'- -UGU-UCUACGUCa---GCGC---GUGCGCGuac -5'
24261 3' -54.4 NC_005263.2 + 10711 0.68 0.551605
Target:  5'- gACGcGAUGCAcGUCGCGCagccaggGCGaCGCAg- -3'
miRNA:   3'- -UGUuCUACGU-CAGCGCG-------UGC-GCGUac -5'
24261 3' -54.4 NC_005263.2 + 21182 0.68 0.541677
Target:  5'- gGCcGGAcGCGGaCGCGCGCgGCGCGg- -3'
miRNA:   3'- -UGuUCUaCGUCaGCGCGUG-CGCGUac -5'
24261 3' -54.4 NC_005263.2 + 16405 0.69 0.530716
Target:  5'- gGCAucgcGGGUGCGGUacucggcgucgGCGCugGCGCGg- -3'
miRNA:   3'- -UGU----UCUACGUCAg----------CGCGugCGCGUac -5'
24261 3' -54.4 NC_005263.2 + 27420 0.69 0.530716
Target:  5'- aGCGAG-UGCuGUCGCGU-CGCGCu-- -3'
miRNA:   3'- -UGUUCuACGuCAGCGCGuGCGCGuac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.