miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24261 3' -54.4 NC_005263.2 + 10736 1.07 0.001148
Target:  5'- gACAAGAUGCAGUCGCGCACGCGCAUGc -3'
miRNA:   3'- -UGUUCUACGUCAGCGCGUGCGCGUAC- -5'
24261 3' -54.4 NC_005263.2 + 1100 0.74 0.273655
Target:  5'- cGCAGGuucauguUGCAGUCGCGCGCGaagucCGCGc- -3'
miRNA:   3'- -UGUUCu------ACGUCAGCGCGUGC-----GCGUac -5'
24261 3' -54.4 NC_005263.2 + 15371 0.74 0.273655
Target:  5'- cGCAAGcgGCAG-CGCGUACGuUGCAUu -3'
miRNA:   3'- -UGUUCuaCGUCaGCGCGUGC-GCGUAc -5'
24261 3' -54.4 NC_005263.2 + 45389 0.73 0.303434
Target:  5'- uACGuGAUGCA--CGCGCGCuGCGCAUGc -3'
miRNA:   3'- -UGUuCUACGUcaGCGCGUG-CGCGUAC- -5'
24261 3' -54.4 NC_005263.2 + 30424 0.73 0.303434
Target:  5'- aGCAGGucgGUGCGGUCGaGCGCGagcaGCGUGa -3'
miRNA:   3'- -UGUUC---UACGUCAGCgCGUGCg---CGUAC- -5'
24261 3' -54.4 NC_005263.2 + 29820 0.71 0.38849
Target:  5'- ---cGAUGCAG-CGCGCACgacgaGCGCAUc -3'
miRNA:   3'- uguuCUACGUCaGCGCGUG-----CGCGUAc -5'
24261 3' -54.4 NC_005263.2 + 2709 0.71 0.38849
Target:  5'- gGC-AGGUGCA--UGCGCAgCGCGCGUGc -3'
miRNA:   3'- -UGuUCUACGUcaGCGCGU-GCGCGUAC- -5'
24261 3' -54.4 NC_005263.2 + 22820 0.71 0.407279
Target:  5'- -aAAGAUcacGCuGUCGCGCGCGCGgAUc -3'
miRNA:   3'- ugUUCUA---CGuCAGCGCGUGCGCgUAc -5'
24261 3' -54.4 NC_005263.2 + 22365 0.7 0.426627
Target:  5'- cGCGGGcgGacaGGUCGUGCACgGCGCGc- -3'
miRNA:   3'- -UGUUCuaCg--UCAGCGCGUG-CGCGUac -5'
24261 3' -54.4 NC_005263.2 + 5756 0.7 0.426627
Target:  5'- cACAAGucuaucggaAUGUcacgguugauAGUCGCGCACGCGCc-- -3'
miRNA:   3'- -UGUUC---------UACG----------UCAGCGCGUGCGCGuac -5'
24261 3' -54.4 NC_005263.2 + 3541 0.7 0.44651
Target:  5'- aGCGGGAUcagcGCAGUgcCGCGCAgCGCGUcgGc -3'
miRNA:   3'- -UGUUCUA----CGUCA--GCGCGU-GCGCGuaC- -5'
24261 3' -54.4 NC_005263.2 + 19831 0.7 0.44651
Target:  5'- cACAAGGUG-AGUCGCGCGCGaucgacgaUGCGa- -3'
miRNA:   3'- -UGUUCUACgUCAGCGCGUGC--------GCGUac -5'
24261 3' -54.4 NC_005263.2 + 95 0.7 0.456644
Target:  5'- uGCGAGAUuGCGGUCGU---CGCGCAUa -3'
miRNA:   3'- -UGUUCUA-CGUCAGCGcguGCGCGUAc -5'
24261 3' -54.4 NC_005263.2 + 18284 0.7 0.456644
Target:  5'- ---cGAUGCGcucGUCGUGCGCGCuGCAUc -3'
miRNA:   3'- uguuCUACGU---CAGCGCGUGCG-CGUAc -5'
24261 3' -54.4 NC_005263.2 + 8944 0.7 0.4669
Target:  5'- gGCAuaccGAUGCcGUCGCGCAUGUcaGCGUc -3'
miRNA:   3'- -UGUu---CUACGuCAGCGCGUGCG--CGUAc -5'
24261 3' -54.4 NC_005263.2 + 3428 0.69 0.495163
Target:  5'- cGCAGGAUGgccgccgacuucuuCGG-CGCGCGCGaCGCAUc -3'
miRNA:   3'- -UGUUCUAC--------------GUCaGCGCGUGC-GCGUAc -5'
24261 3' -54.4 NC_005263.2 + 26129 0.69 0.509047
Target:  5'- aGCAAaugGCAGaUCuGCGCGCGCaGCAUGc -3'
miRNA:   3'- -UGUUcuaCGUC-AG-CGCGUGCG-CGUAC- -5'
24261 3' -54.4 NC_005263.2 + 2664 0.69 0.527444
Target:  5'- uCGAGGUGCAGgCGUGCGuugugguagcugauCGCGCGg- -3'
miRNA:   3'- uGUUCUACGUCaGCGCGU--------------GCGCGUac -5'
24261 3' -54.4 NC_005263.2 + 27420 0.69 0.530716
Target:  5'- aGCGAG-UGCuGUCGCGU-CGCGCu-- -3'
miRNA:   3'- -UGUUCuACGuCAGCGCGuGCGCGuac -5'
24261 3' -54.4 NC_005263.2 + 16405 0.69 0.530716
Target:  5'- gGCAucgcGGGUGCGGUacucggcgucgGCGCugGCGCGg- -3'
miRNA:   3'- -UGU----UCUACGUCAg----------CGCGugCGCGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.