miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24261 5' -55.7 NC_005263.2 + 6286 0.66 0.636171
Target:  5'- aGGCGUCugcgcaaacAGCaacaccgGCGCGCccGGUUUGCa -3'
miRNA:   3'- -CCGUAGuu-------UCGa------CGCGCG--CCAGACGa -5'
24261 5' -55.7 NC_005263.2 + 32311 0.66 0.613774
Target:  5'- cGGUGUCGgacGAGCaGCGCGCaguGGUCgucgaGCa -3'
miRNA:   3'- -CCGUAGU---UUCGaCGCGCG---CCAGa----CGa -5'
24261 5' -55.7 NC_005263.2 + 39765 0.66 0.602595
Target:  5'- cGGCAagcucggCAAAGaCUGCuCGaUGGUCUGCc -3'
miRNA:   3'- -CCGUa------GUUUC-GACGcGC-GCCAGACGa -5'
24261 5' -55.7 NC_005263.2 + 3324 0.66 0.5959
Target:  5'- cGGUGuUCAAcgucugcgcgccgccGGCgccGCGCGCGGUCgaGCg -3'
miRNA:   3'- -CCGU-AGUU---------------UCGa--CGCGCGCCAGa-CGa -5'
24261 5' -55.7 NC_005263.2 + 34000 0.66 0.5959
Target:  5'- cGGCcgUguuGGCUGCGuCGCGGcgcgcgauccagagCUGCUg -3'
miRNA:   3'- -CCGuaGuu-UCGACGC-GCGCCa-------------GACGA- -5'
24261 5' -55.7 NC_005263.2 + 33410 0.66 0.590329
Target:  5'- cGGCGUCGaucgccuuGAGCgccGCGCgcgcguaGCGGUCgGCc -3'
miRNA:   3'- -CCGUAGU--------UUCGa--CGCG-------CGCCAGaCGa -5'
24261 5' -55.7 NC_005263.2 + 43254 0.67 0.580326
Target:  5'- cGGCAUC--GGCacgGCGCGCGcGUacggGCa -3'
miRNA:   3'- -CCGUAGuuUCGa--CGCGCGC-CAga--CGa -5'
24261 5' -55.7 NC_005263.2 + 7171 0.67 0.568148
Target:  5'- cGGcCAUCGccGCUGCgauacccggguauGUGCGG-CUGCg -3'
miRNA:   3'- -CC-GUAGUuuCGACG-------------CGCGCCaGACGa -5'
24261 5' -55.7 NC_005263.2 + 24997 0.67 0.547275
Target:  5'- uGGCcgCAAccggguauGGCUGCGgugGCGGUggCUGCg -3'
miRNA:   3'- -CCGuaGUU--------UCGACGCg--CGCCA--GACGa -5'
24261 5' -55.7 NC_005263.2 + 9412 0.68 0.525573
Target:  5'- aGGUAUCGcGGCUGCGgCGCuGUUaGCc -3'
miRNA:   3'- -CCGUAGUuUCGACGC-GCGcCAGaCGa -5'
24261 5' -55.7 NC_005263.2 + 22558 0.68 0.525573
Target:  5'- aGGCGuUCAAgauAGCUGauCGUGCGcUCUGCg -3'
miRNA:   3'- -CCGU-AGUU---UCGAC--GCGCGCcAGACGa -5'
24261 5' -55.7 NC_005263.2 + 5855 0.68 0.525573
Target:  5'- cGCcugCAuuGCUGCaaGCGCGGUCgaUGCg -3'
miRNA:   3'- cCGua-GUuuCGACG--CGCGCCAG--ACGa -5'
24261 5' -55.7 NC_005263.2 + 22325 0.68 0.514843
Target:  5'- cGGCAc----GCUcaGCGCGCGGgCUGCUu -3'
miRNA:   3'- -CCGUaguuuCGA--CGCGCGCCaGACGA- -5'
24261 5' -55.7 NC_005263.2 + 21104 0.68 0.504204
Target:  5'- gGGCggCGacGAGCccgGCGCaGCGGgugCUGCUc -3'
miRNA:   3'- -CCGuaGU--UUCGa--CGCG-CGCCa--GACGA- -5'
24261 5' -55.7 NC_005263.2 + 24555 0.68 0.48322
Target:  5'- gGGCggCGGcGGCUGCGCcaCGGUCgGCa -3'
miRNA:   3'- -CCGuaGUU-UCGACGCGc-GCCAGaCGa -5'
24261 5' -55.7 NC_005263.2 + 24942 0.69 0.462665
Target:  5'- uGGCggCGGacGGCgGUGCGCGGUUcGCa -3'
miRNA:   3'- -CCGuaGUU--UCGaCGCGCGCCAGaCGa -5'
24261 5' -55.7 NC_005263.2 + 14084 0.69 0.45256
Target:  5'- cGGCccauGUCGGcugguaccGGCUGCGCGgCGGUC-GCc -3'
miRNA:   3'- -CCG----UAGUU--------UCGACGCGC-GCCAGaCGa -5'
24261 5' -55.7 NC_005263.2 + 39246 0.69 0.451557
Target:  5'- gGGCcgCGuaucccgucggccGAGCUGCGCGCGa--UGCUu -3'
miRNA:   3'- -CCGuaGU-------------UUCGACGCGCGCcagACGA- -5'
24261 5' -55.7 NC_005263.2 + 16425 0.69 0.432721
Target:  5'- cGGCGUCGgcGCUgGCGCGgCGGgcCUcGCUg -3'
miRNA:   3'- -CCGUAGUuuCGA-CGCGC-GCCa-GA-CGA- -5'
24261 5' -55.7 NC_005263.2 + 21969 0.7 0.403938
Target:  5'- aGGCAU----GCUGCGCGCGcagaUCUGCc -3'
miRNA:   3'- -CCGUAguuuCGACGCGCGCc---AGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.