miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24262 3' -54.4 NC_005263.2 + 37752 0.66 0.688146
Target:  5'- ---aUGGUuugcucgaugucGGCAagcuGCCGCGCCUGC-GCg -3'
miRNA:   3'- guugACCA------------UUGU----UGGCGCGGGCGuCG- -5'
24262 3' -54.4 NC_005263.2 + 9451 0.66 0.688146
Target:  5'- aGACgGGcaccacgGGCAGCggCGCGCCCggcuGCAGCu -3'
miRNA:   3'- gUUGaCCa------UUGUUG--GCGCGGG----CGUCG- -5'
24262 3' -54.4 NC_005263.2 + 38379 0.66 0.688146
Target:  5'- -cACUGcuGUGGCGAacgagcgcaaGCGCgCCGCAGCg -3'
miRNA:   3'- guUGAC--CAUUGUUgg--------CGCG-GGCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 36569 0.66 0.688146
Target:  5'- gCGGCaaGGUGACGacgaACCGCGCCgccuucauCGCGcGCg -3'
miRNA:   3'- -GUUGa-CCAUUGU----UGGCGCGG--------GCGU-CG- -5'
24262 3' -54.4 NC_005263.2 + 44052 0.66 0.688146
Target:  5'- gGAuCUGG-AACAcgguGCUGCGgCgGCAGCg -3'
miRNA:   3'- gUU-GACCaUUGU----UGGCGCgGgCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 31375 0.66 0.688146
Target:  5'- uGACUGacgccgGGCAAUUGCGCCaccgcuCGCGGCc -3'
miRNA:   3'- gUUGACca----UUGUUGGCGCGG------GCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 1657 0.66 0.687038
Target:  5'- gAACUGGUcgaccGGCAGCUuuuuguaGCGCgCCGcCAGUu -3'
miRNA:   3'- gUUGACCA-----UUGUUGG-------CGCG-GGC-GUCG- -5'
24262 3' -54.4 NC_005263.2 + 20757 0.66 0.687038
Target:  5'- -cGCUGGcggccugUAACAugGCCGCGCCgcugauCGuCGGCg -3'
miRNA:   3'- guUGACC-------AUUGU--UGGCGCGG------GC-GUCG- -5'
24262 3' -54.4 NC_005263.2 + 5008 0.67 0.677039
Target:  5'- aGACacGGUGccuuCcGCCGCGCUCGaCAGCc -3'
miRNA:   3'- gUUGa-CCAUu---GuUGGCGCGGGC-GUCG- -5'
24262 3' -54.4 NC_005263.2 + 18783 0.67 0.677039
Target:  5'- -cGCUGGUu---AUCGUGCUCGCcGCg -3'
miRNA:   3'- guUGACCAuuguUGGCGCGGGCGuCG- -5'
24262 3' -54.4 NC_005263.2 + 37956 0.67 0.677039
Target:  5'- gCAACcGGccgauGCCGCGCCgGCuGGCg -3'
miRNA:   3'- -GUUGaCCauuguUGGCGCGGgCG-UCG- -5'
24262 3' -54.4 NC_005263.2 + 9404 0.67 0.665888
Target:  5'- --uCUGGUuaAGguAUCGCGgCUGCGGCg -3'
miRNA:   3'- guuGACCA--UUguUGGCGCgGGCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 19123 0.67 0.665888
Target:  5'- gCGAuCUGGcAGCAGCaUGCGCCCGaauuccGCg -3'
miRNA:   3'- -GUU-GACCaUUGUUG-GCGCGGGCgu----CG- -5'
24262 3' -54.4 NC_005263.2 + 24897 0.67 0.665888
Target:  5'- gCAAcCUGG-AACAACCGUGa--GCGGCc -3'
miRNA:   3'- -GUU-GACCaUUGUUGGCGCgggCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 29300 0.67 0.654703
Target:  5'- gCGGCcgGGUcGGCAugCGCaucGCgCGCGGCg -3'
miRNA:   3'- -GUUGa-CCA-UUGUugGCG---CGgGCGUCG- -5'
24262 3' -54.4 NC_005263.2 + 729 0.67 0.654703
Target:  5'- uGGCgaGGUugauuGCcGuuGCGCCCuGCAGCa -3'
miRNA:   3'- gUUGa-CCAu----UGuUggCGCGGG-CGUCG- -5'
24262 3' -54.4 NC_005263.2 + 3308 0.67 0.654703
Target:  5'- --cCUGGgcGCGGCCGCGCgguguucaacguCUGCGcGCc -3'
miRNA:   3'- guuGACCauUGUUGGCGCG------------GGCGU-CG- -5'
24262 3' -54.4 NC_005263.2 + 10805 0.67 0.654703
Target:  5'- uCGAUUGGaAACAacGCCGCGCCauacggGUAGg -3'
miRNA:   3'- -GUUGACCaUUGU--UGGCGCGGg-----CGUCg -5'
24262 3' -54.4 NC_005263.2 + 47482 0.67 0.643497
Target:  5'- -cACUGGcAGC-ACCG-GCCCGCugucgGGCa -3'
miRNA:   3'- guUGACCaUUGuUGGCgCGGGCG-----UCG- -5'
24262 3' -54.4 NC_005263.2 + 46819 0.67 0.643497
Target:  5'- cCGAUcGcGUAacGCAACgCGCGCCagGCGGCg -3'
miRNA:   3'- -GUUGaC-CAU--UGUUG-GCGCGGg-CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.