miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24262 5' -57.5 NC_005263.2 + 19394 0.67 0.484613
Target:  5'- uCGGCgGCGcgcaguacggcaACGCGCGcGUUGAgguguucggcguGCCGCUc -3'
miRNA:   3'- -GCCGaCGC------------UGUGCGC-CAAUU------------CGGCGA- -5'
24262 5' -57.5 NC_005263.2 + 2663 0.67 0.474468
Target:  5'- uCGGCgGCGACAC-CGGc--AGCCuGCa -3'
miRNA:   3'- -GCCGaCGCUGUGcGCCaauUCGG-CGa -5'
24262 5' -57.5 NC_005263.2 + 30275 0.67 0.464429
Target:  5'- aGcGCUGCGcaaucgggccGCGCGCGGcauccucGGCCGCc -3'
miRNA:   3'- gC-CGACGC----------UGUGCGCCaau----UCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 21626 0.68 0.444692
Target:  5'- aGGCgcagugcgGCGACGCGCGGcguauGGCacuCGCg -3'
miRNA:   3'- gCCGa-------CGCUGUGCGCCaau--UCG---GCGa -5'
24262 5' -57.5 NC_005263.2 + 19747 0.68 0.444692
Target:  5'- uCGGCgcugGCGcGCugGCGGcgcucguGGCCGUg -3'
miRNA:   3'- -GCCGa---CGC-UGugCGCCaau----UCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 16486 0.68 0.444692
Target:  5'- aCGGCgcUGCGcCGCGCGGcc--GUCGCg -3'
miRNA:   3'- -GCCG--ACGCuGUGCGCCaauuCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 13756 0.68 0.443718
Target:  5'- cCGGUuuacacgGCGACAgGCGcGUcgcuuaaUGGGCCGCa -3'
miRNA:   3'- -GCCGa------CGCUGUgCGC-CA-------AUUCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 26889 0.68 0.440801
Target:  5'- aCGGCUGCGACGCGCucgaaa--CGCa -3'
miRNA:   3'- -GCCGACGCUGUGCGccaauucgGCGa -5'
24262 5' -57.5 NC_005263.2 + 35534 0.68 0.425434
Target:  5'- uGcGCccgGCGGCGCGCGGgcGGG-CGCUa -3'
miRNA:   3'- gC-CGa--CGCUGUGCGCCaaUUCgGCGA- -5'
24262 5' -57.5 NC_005263.2 + 3308 0.68 0.415994
Target:  5'- gCGcGCgGCGGCGCGCGGUUGAauuaaacuaucGCuuCGCg -3'
miRNA:   3'- -GC-CGaCGCUGUGCGCCAAUU-----------CG--GCGa -5'
24262 5' -57.5 NC_005263.2 + 27886 0.68 0.406682
Target:  5'- aGGCcgGCGGCGCGCaGUcGGGCaaaGCa -3'
miRNA:   3'- gCCGa-CGCUGUGCGcCAaUUCGg--CGa -5'
24262 5' -57.5 NC_005263.2 + 35920 0.68 0.406682
Target:  5'- aGGCgaccaugGCGACGCGCGu----GCCGUUa -3'
miRNA:   3'- gCCGa------CGCUGUGCGCcaauuCGGCGA- -5'
24262 5' -57.5 NC_005263.2 + 43671 0.69 0.397503
Target:  5'- uGGCcgGCGGacaacaGCGCGGaUUGGGCCGg- -3'
miRNA:   3'- gCCGa-CGCUg-----UGCGCC-AAUUCGGCga -5'
24262 5' -57.5 NC_005263.2 + 7144 0.69 0.396592
Target:  5'- aCGGCUaugucaaGCGACccuauuGCGCGGccaucGCCGCUg -3'
miRNA:   3'- -GCCGA-------CGCUG------UGCGCCaauu-CGGCGA- -5'
24262 5' -57.5 NC_005263.2 + 14103 0.69 0.394775
Target:  5'- cCGGCUGCG-CG-GCGGUcgccgucgcgaucguAGCCGCa -3'
miRNA:   3'- -GCCGACGCuGUgCGCCAau-------------UCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 8197 0.69 0.388457
Target:  5'- uCGGUUGCGGCACGUacGGc---GCCGUc -3'
miRNA:   3'- -GCCGACGCUGUGCG--CCaauuCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 25013 0.69 0.379548
Target:  5'- uGGCUGCGGug-GCGGU--GGCUGCg -3'
miRNA:   3'- gCCGACGCUgugCGCCAauUCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 29255 0.69 0.370777
Target:  5'- aGGCacGCGuuguuCACGCGGUcgaacgcggcaaUGAGCUGCa -3'
miRNA:   3'- gCCGa-CGCu----GUGCGCCA------------AUUCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 27821 0.69 0.36129
Target:  5'- gCGGCgucaccuucGCGGCACGCG-UUGAauucggcGCCGCUg -3'
miRNA:   3'- -GCCGa--------CGCUGUGCGCcAAUU-------CGGCGA- -5'
24262 5' -57.5 NC_005263.2 + 7952 0.7 0.316429
Target:  5'- aGGUUGCcguguccuuaccuucGACACGCGGcgccaGAGCUGCa -3'
miRNA:   3'- gCCGACG---------------CUGUGCGCCaa---UUCGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.