miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24263 3' -54.4 NC_005263.2 + 22194 0.66 0.762055
Target:  5'- aCCGGUGcUGGCGUggcccggggcauuUCGUCgCGAcGUGCg -3'
miRNA:   3'- -GGCCAUaGCUGCA-------------AGCGGaGCU-CGCG- -5'
24263 3' -54.4 NC_005263.2 + 22323 0.68 0.678648
Target:  5'- gCGGgcGUCGACGUcgagUCGCgcagugagUUCGAGaCGCg -3'
miRNA:   3'- gGCCa-UAGCUGCA----AGCG--------GAGCUC-GCG- -5'
24263 3' -54.4 NC_005263.2 + 22798 0.7 0.56971
Target:  5'- aUGGUGUCGaaGCGgUCGUUcaugCGGGCGCu -3'
miRNA:   3'- gGCCAUAGC--UGCaAGCGGa---GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 23880 0.67 0.710936
Target:  5'- gUCGGUA-CGacaaGCGUgagCGCgCUCguGAGCGCg -3'
miRNA:   3'- -GGCCAUaGC----UGCAa--GCG-GAG--CUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 24691 0.72 0.426623
Target:  5'- gCCGGUAaCGGCGgcgCGCCgaacgugcCGGGCGg -3'
miRNA:   3'- -GGCCAUaGCUGCaa-GCGGa-------GCUCGCg -5'
24263 3' -54.4 NC_005263.2 + 24785 0.71 0.465509
Target:  5'- gCGGcGUCGGCGgcUCGCCgggCGucggcGGCGCg -3'
miRNA:   3'- gGCCaUAGCUGCa-AGCGGa--GC-----UCGCG- -5'
24263 3' -54.4 NC_005263.2 + 25932 0.67 0.732098
Target:  5'- aCCGGUucgccCGGCGcuggCGCaaugCGAGCGUc -3'
miRNA:   3'- -GGCCAua---GCUGCaa--GCGga--GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 26619 0.66 0.773143
Target:  5'- gCGGUaAUCGACGgugCGCCggauUUGccaguGGCGCc -3'
miRNA:   3'- gGCCA-UAGCUGCaa-GCGG----AGC-----UCGCG- -5'
24263 3' -54.4 NC_005263.2 + 27737 0.68 0.689469
Target:  5'- aCGGUGUCGGCGcgcgaUCaGCCaUGcGCGCc -3'
miRNA:   3'- gGCCAUAGCUGCa----AG-CGGaGCuCGCG- -5'
24263 3' -54.4 NC_005263.2 + 28016 0.68 0.693782
Target:  5'- gCUGGUcgaccagacgccauUCGGguaGUUCGgCUCGAGCGUg -3'
miRNA:   3'- -GGCCAu-------------AGCUg--CAAGCgGAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 28966 0.68 0.645966
Target:  5'- aUCGGUGUCG-CGgaa--UUCGGGCGCa -3'
miRNA:   3'- -GGCCAUAGCuGCaagcgGAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 29154 0.68 0.645966
Target:  5'- gCCGGcugCGcuCGUaaccggCGCgCUCGAGCGCu -3'
miRNA:   3'- -GGCCauaGCu-GCAa-----GCG-GAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 29303 0.66 0.773143
Target:  5'- gCCGG-GUCGGCaugCGCaUCGcGCGCg -3'
miRNA:   3'- -GGCCaUAGCUGcaaGCGgAGCuCGCG- -5'
24263 3' -54.4 NC_005263.2 + 29590 0.75 0.307093
Target:  5'- gCGGUGUCGACGc-CGCCgaucgCGAGgCGUu -3'
miRNA:   3'- gGCCAUAGCUGCaaGCGGa----GCUC-GCG- -5'
24263 3' -54.4 NC_005263.2 + 29717 0.67 0.742535
Target:  5'- cCCGcGUGcCGGCGaagaacUUCGCCUUGAucgucugcagguGCGCc -3'
miRNA:   3'- -GGC-CAUaGCUGC------AAGCGGAGCU------------CGCG- -5'
24263 3' -54.4 NC_005263.2 + 30258 0.66 0.752863
Target:  5'- gCGGUagucGUCGGCGaagCGCUgcgcaaUCGGGcCGCg -3'
miRNA:   3'- gGCCA----UAGCUGCaa-GCGG------AGCUC-GCG- -5'
24263 3' -54.4 NC_005263.2 + 31268 0.68 0.689469
Target:  5'- cUCGcGcAUCGACugGUUgaaCGCgUCGAGCGCg -3'
miRNA:   3'- -GGC-CaUAGCUG--CAA---GCGgAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 31613 0.74 0.346653
Target:  5'- gCCGGUcgCGACGgccgCGCggCGcAGCGCc -3'
miRNA:   3'- -GGCCAuaGCUGCaa--GCGgaGC-UCGCG- -5'
24263 3' -54.4 NC_005263.2 + 32679 0.69 0.619726
Target:  5'- gCGGcgaUGUCGACGUgCGUCagcaggucggucaCGAGCGCa -3'
miRNA:   3'- gGCC---AUAGCUGCAaGCGGa------------GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 32786 0.77 0.23244
Target:  5'- cUCGGUGUCGGCccgCGCCUCGcGCaGCu -3'
miRNA:   3'- -GGCCAUAGCUGcaaGCGGAGCuCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.