miRNA display CGI


Results 61 - 80 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24263 3' -54.4 NC_005263.2 + 33403 0.91 0.025696
Target:  5'- uCCGG-AUCGGCGUcgaUCGCCUUGAGCGCc -3'
miRNA:   3'- -GGCCaUAGCUGCA---AGCGGAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 35643 0.7 0.527045
Target:  5'- gCCGGUAUCG-UGUUcCGCg-CGGGCGa -3'
miRNA:   3'- -GGCCAUAGCuGCAA-GCGgaGCUCGCg -5'
24263 3' -54.4 NC_005263.2 + 35970 0.66 0.773143
Target:  5'- -aGGcgcUCGAC---CGCCUgGAGCGCg -3'
miRNA:   3'- ggCCau-AGCUGcaaGCGGAgCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 36070 0.66 0.752863
Target:  5'- aCGGaagCGAUGUaccggCGCaagCUUGAGCGCg -3'
miRNA:   3'- gGCCauaGCUGCAa----GCG---GAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 36361 0.66 0.783073
Target:  5'- gCCaGGUGUCG-CG-UCGCCUaCGGuUGCa -3'
miRNA:   3'- -GG-CCAUAGCuGCaAGCGGA-GCUcGCG- -5'
24263 3' -54.4 NC_005263.2 + 36403 0.68 0.689469
Target:  5'- aUCGGUcgUGAUGUcccaggUCGCgggaUCGAGgGCg -3'
miRNA:   3'- -GGCCAuaGCUGCA------AGCGg---AGCUCgCG- -5'
24263 3' -54.4 NC_005263.2 + 36865 0.69 0.58052
Target:  5'- cCCGGcgGUCGAgaaUUCGaCC-CGGGCGCg -3'
miRNA:   3'- -GGCCa-UAGCUgc-AAGC-GGaGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 37684 0.68 0.656886
Target:  5'- gCCGG-AUCaGGCGUUCGUUgaaCGcGCGCc -3'
miRNA:   3'- -GGCCaUAG-CUGCAAGCGGa--GCuCGCG- -5'
24263 3' -54.4 NC_005263.2 + 38353 0.66 0.783073
Target:  5'- gCGGcgacCGGCGaaaugCGCCUCGAagGCGUg -3'
miRNA:   3'- gGCCaua-GCUGCaa---GCGGAGCU--CGCG- -5'
24263 3' -54.4 NC_005263.2 + 38395 0.68 0.678648
Target:  5'- gCCGaacugAUCGACGcacugucgCGCgUCGGGUGCg -3'
miRNA:   3'- -GGCca---UAGCUGCaa------GCGgAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 38509 0.79 0.178409
Target:  5'- aUCGGcGUCGACGUgucgcaggUCGCCaagggcagCGAGCGCg -3'
miRNA:   3'- -GGCCaUAGCUGCA--------AGCGGa-------GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 39029 0.67 0.710936
Target:  5'- gCCGGUcgCGcUGUUCGgCaCGGGCGa -3'
miRNA:   3'- -GGCCAuaGCuGCAAGCgGaGCUCGCg -5'
24263 3' -54.4 NC_005263.2 + 39040 0.66 0.76307
Target:  5'- aCUGGcacGUCGAggcgcuacagcUGUUCGCCgaggCGAaaGCGCg -3'
miRNA:   3'- -GGCCa--UAGCU-----------GCAAGCGGa---GCU--CGCG- -5'
24263 3' -54.4 NC_005263.2 + 41146 0.68 0.656886
Target:  5'- uCCGGaaacCGGCGUUCGCgCggcgUGGGCGg -3'
miRNA:   3'- -GGCCaua-GCUGCAAGCG-Ga---GCUCGCg -5'
24263 3' -54.4 NC_005263.2 + 41788 0.68 0.667783
Target:  5'- -aGcGUAUCGgcACGUUUGCaaacCGGGCGCg -3'
miRNA:   3'- ggC-CAUAGC--UGCAAGCGga--GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 43828 0.75 0.285062
Target:  5'- gCCGGgcaCGAUGUUCGUgUCGAccggGCGCa -3'
miRNA:   3'- -GGCCauaGCUGCAAGCGgAGCU----CGCG- -5'
24263 3' -54.4 NC_005263.2 + 45106 0.67 0.710936
Target:  5'- --cGUcgCGGCGgaugCGCCggCGAGCGUc -3'
miRNA:   3'- ggcCAuaGCUGCaa--GCGGa-GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 45452 0.7 0.56971
Target:  5'- gCCGGUGUCGcCGccgauaCGCCggCaAGCGCg -3'
miRNA:   3'- -GGCCAUAGCuGCaa----GCGGa-GcUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 45782 0.68 0.678648
Target:  5'- aCGGUGcUCG-CGUUcCGCCaguucaacgCGGGCGUg -3'
miRNA:   3'- gGCCAU-AGCuGCAA-GCGGa--------GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 46162 0.68 0.645966
Target:  5'- gCGGUugcCGGCG-UCGCCggugCcGGCGCg -3'
miRNA:   3'- gGCCAua-GCUGCaAGCGGa---GcUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.