miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24263 3' -54.4 NC_005263.2 + 22323 0.68 0.678648
Target:  5'- gCGGgcGUCGACGUcgagUCGCgcagugagUUCGAGaCGCg -3'
miRNA:   3'- gGCCa-UAGCUGCA----AGCG--------GAGCUC-GCG- -5'
24263 3' -54.4 NC_005263.2 + 22194 0.66 0.762055
Target:  5'- aCCGGUGcUGGCGUggcccggggcauuUCGUCgCGAcGUGCg -3'
miRNA:   3'- -GGCCAUaGCUGCA-------------AGCGGaGCU-CGCG- -5'
24263 3' -54.4 NC_005263.2 + 21821 0.69 0.602259
Target:  5'- aCCGGgcucaucgAUUGGCGcaaagCGCCaucUUGGGCGCa -3'
miRNA:   3'- -GGCCa-------UAGCUGCaa---GCGG---AGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 21205 0.7 0.548247
Target:  5'- gCGGgcgaGugGgugCGUUUCGAGCGCg -3'
miRNA:   3'- gGCCauagCugCaa-GCGGAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 20709 0.67 0.700235
Target:  5'- gCCGGUcgUGACGca-GCCggUC-AGCGCg -3'
miRNA:   3'- -GGCCAuaGCUGCaagCGG--AGcUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 20667 0.66 0.752863
Target:  5'- aUCGGgcUCGcagUGUUUGCC--GAGCGCg -3'
miRNA:   3'- -GGCCauAGCu--GCAAGCGGagCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 20193 0.76 0.257655
Target:  5'- gCCGGg--CGACGcgcCGCCgUCGAGUGCu -3'
miRNA:   3'- -GGCCauaGCUGCaa-GCGG-AGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 19880 0.71 0.475517
Target:  5'- -aGGUAUCGAUGUUUGCCgaCGccGUGCc -3'
miRNA:   3'- ggCCAUAGCUGCAAGCGGa-GCu-CGCG- -5'
24263 3' -54.4 NC_005263.2 + 19867 0.69 0.602259
Target:  5'- -aGGUcaCGGCGagCGCggCGAGCGCg -3'
miRNA:   3'- ggCCAuaGCUGCaaGCGgaGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 19783 0.68 0.679732
Target:  5'- aCGGgcUCGGCGgccgaccagauucgCGCCgCGAucGCGCa -3'
miRNA:   3'- gGCCauAGCUGCaa------------GCGGaGCU--CGCG- -5'
24263 3' -54.4 NC_005263.2 + 19585 0.67 0.736285
Target:  5'- cCCGGcGUCGAaccgaaguucaacuuCGUcgacaUCGCgCUCGAGCa- -3'
miRNA:   3'- -GGCCaUAGCU---------------GCA-----AGCG-GAGCUCGcg -5'
24263 3' -54.4 NC_005263.2 + 18910 0.7 0.53761
Target:  5'- gCCGGccugcGUCGAgCGUgaccgCGCggcacgagcgCUCGAGCGCg -3'
miRNA:   3'- -GGCCa----UAGCU-GCAa----GCG----------GAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 18784 0.66 0.783073
Target:  5'- gCUGGuUAUCG-UGcUCGCCgcgcgCGAuGCGCa -3'
miRNA:   3'- -GGCC-AUAGCuGCaAGCGGa----GCU-CGCG- -5'
24263 3' -54.4 NC_005263.2 + 17336 0.68 0.666695
Target:  5'- gCCGGUGgcuUCGACGUUCGgCaucgcggUCGAcgauccgaaccGCGUg -3'
miRNA:   3'- -GGCCAU---AGCUGCAAGCgG-------AGCU-----------CGCG- -5'
24263 3' -54.4 NC_005263.2 + 17003 0.77 0.220631
Target:  5'- gCCgGGUGUCGaaGCGUUCGUaucgCUCGAGCaGCg -3'
miRNA:   3'- -GG-CCAUAGC--UGCAAGCG----GAGCUCG-CG- -5'
24263 3' -54.4 NC_005263.2 + 16906 0.73 0.379958
Target:  5'- gCGGUGUCGAC---CGUCUCGAacaacuuGCGCa -3'
miRNA:   3'- gGCCAUAGCUGcaaGCGGAGCU-------CGCG- -5'
24263 3' -54.4 NC_005263.2 + 16582 0.71 0.465509
Target:  5'- gCCGGcggCGacGCGUUCGCCgggcUCGcGCGCg -3'
miRNA:   3'- -GGCCauaGC--UGCAAGCGG----AGCuCGCG- -5'
24263 3' -54.4 NC_005263.2 + 16526 0.67 0.720502
Target:  5'- aCCGGcaaaUGUCGGCGUUgucgagcacggcgCGCCgccUGGGCaGCg -3'
miRNA:   3'- -GGCC----AUAGCUGCAA-------------GCGGa--GCUCG-CG- -5'
24263 3' -54.4 NC_005263.2 + 16417 0.68 0.667783
Target:  5'- gCGGUAcUCGGCGUcggCGCU---GGCGCg -3'
miRNA:   3'- gGCCAU-AGCUGCAa--GCGGagcUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 15660 0.67 0.72156
Target:  5'- aCCGG-AUCGACGacugCGCUUgGcGUGCc -3'
miRNA:   3'- -GGCCaUAGCUGCaa--GCGGAgCuCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.