miRNA display CGI


Results 41 - 60 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24263 3' -54.4 NC_005263.2 + 27737 0.68 0.689469
Target:  5'- aCGGUGUCGGCGcgcgaUCaGCCaUGcGCGCc -3'
miRNA:   3'- gGCCAUAGCUGCa----AG-CGGaGCuCGCG- -5'
24263 3' -54.4 NC_005263.2 + 36403 0.68 0.689469
Target:  5'- aUCGGUcgUGAUGUcccaggUCGCgggaUCGAGgGCg -3'
miRNA:   3'- -GGCCAuaGCUGCA------AGCGg---AGCUCgCG- -5'
24263 3' -54.4 NC_005263.2 + 26619 0.66 0.773143
Target:  5'- gCGGUaAUCGACGgugCGCCggauUUGccaguGGCGCc -3'
miRNA:   3'- gGCCA-UAGCUGCaa-GCGG----AGC-----UCGCG- -5'
24263 3' -54.4 NC_005263.2 + 11945 1.14 0.000597
Target:  5'- gCCGGUAUCGACGUUCGCCUCGAGCGCg -3'
miRNA:   3'- -GGCCAUAGCUGCAAGCGGAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 6633 0.66 0.791878
Target:  5'- gCGGUcgagcaGUCGcGCGUcggUCGCUUCacgugcgGGGCGCa -3'
miRNA:   3'- gGCCA------UAGC-UGCA---AGCGGAG-------CUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 29717 0.67 0.742535
Target:  5'- cCCGcGUGcCGGCGaagaacUUCGCCUUGAucgucugcagguGCGCc -3'
miRNA:   3'- -GGC-CAUaGCUGC------AAGCGGAGCU------------CGCG- -5'
24263 3' -54.4 NC_005263.2 + 25932 0.67 0.732098
Target:  5'- aCCGGUucgccCGGCGcuggCGCaaugCGAGCGUc -3'
miRNA:   3'- -GGCCAua---GCUGCaa--GCGga--GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 35970 0.66 0.773143
Target:  5'- -aGGcgcUCGAC---CGCCUgGAGCGCg -3'
miRNA:   3'- ggCCau-AGCUGcaaGCGGAgCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 24785 0.71 0.465509
Target:  5'- gCGGcGUCGGCGgcUCGCCgggCGucggcGGCGCg -3'
miRNA:   3'- gGCCaUAGCUGCa-AGCGGa--GC-----UCGCG- -5'
24263 3' -54.4 NC_005263.2 + 1165 0.68 0.689469
Target:  5'- gCCcGUcgCGGCGacuugUGCCUCGugcuGCGCg -3'
miRNA:   3'- -GGcCAuaGCUGCaa---GCGGAGCu---CGCG- -5'
24263 3' -54.4 NC_005263.2 + 9137 0.71 0.47955
Target:  5'- gCCGGUcgcGUCGugGUUCGUCUCaugcuuGuuggccgugccgaucAGCGCg -3'
miRNA:   3'- -GGCCA---UAGCugCAAGCGGAG------C---------------UCGCG- -5'
24263 3' -54.4 NC_005263.2 + 659 0.7 0.527045
Target:  5'- gCCGGccagAUCGAacgccucauCGUagcgCGCCUugcCGAGCGCg -3'
miRNA:   3'- -GGCCa---UAGCU---------GCAa---GCGGA---GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 35643 0.7 0.527045
Target:  5'- gCCGGUAUCG-UGUUcCGCg-CGGGCGa -3'
miRNA:   3'- -GGCCAUAGCuGCAA-GCGgaGCUCGCg -5'
24263 3' -54.4 NC_005263.2 + 18910 0.7 0.53761
Target:  5'- gCCGGccugcGUCGAgCGUgaccgCGCggcacgagcgCUCGAGCGCg -3'
miRNA:   3'- -GGCCa----UAGCU-GCAa----GCG----------GAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 45452 0.7 0.56971
Target:  5'- gCCGGUGUCGcCGccgauaCGCCggCaAGCGCg -3'
miRNA:   3'- -GGCCAUAGCuGCaa----GCGGa-GcUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 47920 0.69 0.602259
Target:  5'- gCCGGg--CGcacgggcaGCGggcUCGCCcCGGGCGCg -3'
miRNA:   3'- -GGCCauaGC--------UGCa--AGCGGaGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 36865 0.69 0.58052
Target:  5'- cCCGGcgGUCGAgaaUUCGaCC-CGGGCGCg -3'
miRNA:   3'- -GGCCa-UAGCUgc-AAGC-GGaGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 22323 0.68 0.678648
Target:  5'- gCGGgcGUCGACGUcgagUCGCgcagugagUUCGAGaCGCg -3'
miRNA:   3'- gGCCa-UAGCUGCA----AGCG--------GAGCUC-GCG- -5'
24263 3' -54.4 NC_005263.2 + 45782 0.68 0.678648
Target:  5'- aCGGUGcUCG-CGUUcCGCCaguucaacgCGGGCGUg -3'
miRNA:   3'- gGCCAU-AGCuGCAA-GCGGa--------GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 19783 0.68 0.679732
Target:  5'- aCGGgcUCGGCGgccgaccagauucgCGCCgCGAucGCGCa -3'
miRNA:   3'- gGCCauAGCUGCaa------------GCGGaGCU--CGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.