miRNA display CGI


Results 61 - 80 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24263 3' -54.4 NC_005263.2 + 5956 0.67 0.731048
Target:  5'- aCCGGcaacuggcgcaccUcgCGACa--CGCCUCGcGCGCa -3'
miRNA:   3'- -GGCC-------------AuaGCUGcaaGCGGAGCuCGCG- -5'
24263 3' -54.4 NC_005263.2 + 17336 0.68 0.666695
Target:  5'- gCCGGUGgcuUCGACGUUCGgCaucgcggUCGAcgauccgaaccGCGUg -3'
miRNA:   3'- -GGCCAU---AGCUGCAAGCgG-------AGCU-----------CGCG- -5'
24263 3' -54.4 NC_005263.2 + 41146 0.68 0.656886
Target:  5'- uCCGGaaacCGGCGUUCGCgCggcgUGGGCGg -3'
miRNA:   3'- -GGCCaua-GCUGCAAGCG-Ga---GCUCGCg -5'
24263 3' -54.4 NC_005263.2 + 43828 0.75 0.285062
Target:  5'- gCCGGgcaCGAUGUUCGUgUCGAccggGCGCa -3'
miRNA:   3'- -GGCCauaGCUGCAAGCGgAGCU----CGCG- -5'
24263 3' -54.4 NC_005263.2 + 29590 0.75 0.307093
Target:  5'- gCGGUGUCGACGc-CGCCgaucgCGAGgCGUu -3'
miRNA:   3'- gGCCAUAGCUGCaaGCGGa----GCUC-GCG- -5'
24263 3' -54.4 NC_005263.2 + 16906 0.73 0.379958
Target:  5'- gCGGUGUCGAC---CGUCUCGAacaacuuGCGCa -3'
miRNA:   3'- gGCCAUAGCUGcaaGCGGAGCU-------CGCG- -5'
24263 3' -54.4 NC_005263.2 + 24691 0.72 0.426623
Target:  5'- gCCGGUAaCGGCGgcgCGCCgaacgugcCGGGCGg -3'
miRNA:   3'- -GGCCAUaGCUGCaa-GCGGa-------GCUCGCg -5'
24263 3' -54.4 NC_005263.2 + 16582 0.71 0.465509
Target:  5'- gCCGGcggCGacGCGUUCGCCgggcUCGcGCGCg -3'
miRNA:   3'- -GGCCauaGC--UGCAAGCGG----AGCuCGCG- -5'
24263 3' -54.4 NC_005263.2 + 19880 0.71 0.475517
Target:  5'- -aGGUAUCGAUGUUUGCCgaCGccGUGCc -3'
miRNA:   3'- ggCCAUAGCUGCAAGCGGa-GCu-CGCG- -5'
24263 3' -54.4 NC_005263.2 + 24785 0.71 0.465509
Target:  5'- gCGGcGUCGGCGgcUCGCCgggCGucggcGGCGCg -3'
miRNA:   3'- gGCCaUAGCUGCa-AGCGGa--GC-----UCGCG- -5'
24263 3' -54.4 NC_005263.2 + 9137 0.71 0.47955
Target:  5'- gCCGGUcgcGUCGugGUUCGUCUCaugcuuGuuggccgugccgaucAGCGCg -3'
miRNA:   3'- -GGCCA---UAGCugCAAGCGGAG------C---------------UCGCG- -5'
24263 3' -54.4 NC_005263.2 + 659 0.7 0.527045
Target:  5'- gCCGGccagAUCGAacgccucauCGUagcgCGCCUugcCGAGCGCg -3'
miRNA:   3'- -GGCCa---UAGCU---------GCAa---GCGGA---GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 35643 0.7 0.527045
Target:  5'- gCCGGUAUCG-UGUUcCGCg-CGGGCGa -3'
miRNA:   3'- -GGCCAUAGCuGCAA-GCGgaGCUCGCg -5'
24263 3' -54.4 NC_005263.2 + 18910 0.7 0.53761
Target:  5'- gCCGGccugcGUCGAgCGUgaccgCGCggcacgagcgCUCGAGCGCg -3'
miRNA:   3'- -GGCCa----UAGCU-GCAa----GCG----------GAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 45452 0.7 0.56971
Target:  5'- gCCGGUGUCGcCGccgauaCGCCggCaAGCGCg -3'
miRNA:   3'- -GGCCAUAGCuGCaa----GCGGa-GcUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 36865 0.69 0.58052
Target:  5'- cCCGGcgGUCGAgaaUUCGaCC-CGGGCGCg -3'
miRNA:   3'- -GGCCa-UAGCUgc-AAGC-GGaGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 47920 0.69 0.602259
Target:  5'- gCCGGg--CGcacgggcaGCGggcUCGCCcCGGGCGCg -3'
miRNA:   3'- -GGCCauaGC--------UGCa--AGCGGaGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 10157 0.69 0.602259
Target:  5'- gCGGgcagcUUGGCG-UCGCCgaGAGCGCg -3'
miRNA:   3'- gGCCau---AGCUGCaAGCGGagCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 9715 0.68 0.645966
Target:  5'- aCaGUgcGUCGAUcaGUUCgGCCUCGGGCGg -3'
miRNA:   3'- gGcCA--UAGCUG--CAAG-CGGAGCUCGCg -5'
24263 3' -54.4 NC_005263.2 + 46162 0.68 0.645966
Target:  5'- gCGGUugcCGGCG-UCGCCggugCcGGCGCg -3'
miRNA:   3'- gGCCAua-GCUGCaAGCGGa---GcUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.