miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24263 3' -54.4 NC_005263.2 + 9948 0.67 0.72156
Target:  5'- cCCGGcauuUCGuCGUcuUCGCUgcccugCGGGUGCg -3'
miRNA:   3'- -GGCCau--AGCuGCA--AGCGGa-----GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 15660 0.67 0.72156
Target:  5'- aCCGG-AUCGACGacugCGCUUgGcGUGCc -3'
miRNA:   3'- -GGCCaUAGCUGCaa--GCGGAgCuCGCG- -5'
24263 3' -54.4 NC_005263.2 + 16526 0.67 0.720502
Target:  5'- aCCGGcaaaUGUCGGCGUUgucgagcacggcgCGCCgccUGGGCaGCg -3'
miRNA:   3'- -GGCC----AUAGCUGCAA-------------GCGGa--GCUCG-CG- -5'
24263 3' -54.4 NC_005263.2 + 39029 0.67 0.710936
Target:  5'- gCCGGUcgCGcUGUUCGgCaCGGGCGa -3'
miRNA:   3'- -GGCCAuaGCuGCAAGCgGaGCUCGCg -5'
24263 3' -54.4 NC_005263.2 + 23880 0.67 0.710936
Target:  5'- gUCGGUA-CGacaaGCGUgagCGCgCUCguGAGCGCg -3'
miRNA:   3'- -GGCCAUaGC----UGCAa--GCG-GAG--CUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 45106 0.67 0.710936
Target:  5'- --cGUcgCGGCGgaugCGCCggCGAGCGUc -3'
miRNA:   3'- ggcCAuaGCUGCaa--GCGGa-GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 9638 0.67 0.700235
Target:  5'- gCGGUAaaUCuGGCuugCGCUgUCGAGCGCa -3'
miRNA:   3'- gGCCAU--AG-CUGcaaGCGG-AGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 20709 0.67 0.700235
Target:  5'- gCCGGUcgUGACGca-GCCggUC-AGCGCg -3'
miRNA:   3'- -GGCCAuaGCUGCaagCGG--AGcUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 28016 0.68 0.693782
Target:  5'- gCUGGUcgaccagacgccauUCGGguaGUUCGgCUCGAGCGUg -3'
miRNA:   3'- -GGCCAu-------------AGCUg--CAAGCgGAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 31268 0.68 0.689469
Target:  5'- cUCGcGcAUCGACugGUUgaaCGCgUCGAGCGCg -3'
miRNA:   3'- -GGC-CaUAGCUG--CAA---GCGgAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 1165 0.68 0.689469
Target:  5'- gCCcGUcgCGGCGacuugUGCCUCGugcuGCGCg -3'
miRNA:   3'- -GGcCAuaGCUGCaa---GCGGAGCu---CGCG- -5'
24263 3' -54.4 NC_005263.2 + 36403 0.68 0.689469
Target:  5'- aUCGGUcgUGAUGUcccaggUCGCgggaUCGAGgGCg -3'
miRNA:   3'- -GGCCAuaGCUGCA------AGCGg---AGCUCgCG- -5'
24263 3' -54.4 NC_005263.2 + 27737 0.68 0.689469
Target:  5'- aCGGUGUCGGCGcgcgaUCaGCCaUGcGCGCc -3'
miRNA:   3'- gGCCAUAGCUGCa----AG-CGGaGCuCGCG- -5'
24263 3' -54.4 NC_005263.2 + 19783 0.68 0.679732
Target:  5'- aCGGgcUCGGCGgccgaccagauucgCGCCgCGAucGCGCa -3'
miRNA:   3'- gGCCauAGCUGCaa------------GCGGaGCU--CGCG- -5'
24263 3' -54.4 NC_005263.2 + 38395 0.68 0.678648
Target:  5'- gCCGaacugAUCGACGcacugucgCGCgUCGGGUGCg -3'
miRNA:   3'- -GGCca---UAGCUGCaa------GCGgAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 45782 0.68 0.678648
Target:  5'- aCGGUGcUCG-CGUUcCGCCaguucaacgCGGGCGUg -3'
miRNA:   3'- gGCCAU-AGCuGCAA-GCGGa--------GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 22323 0.68 0.678648
Target:  5'- gCGGgcGUCGACGUcgagUCGCgcagugagUUCGAGaCGCg -3'
miRNA:   3'- gGCCa-UAGCUGCA----AGCG--------GAGCUC-GCG- -5'
24263 3' -54.4 NC_005263.2 + 16417 0.68 0.667783
Target:  5'- gCGGUAcUCGGCGUcggCGCU---GGCGCg -3'
miRNA:   3'- gGCCAU-AGCUGCAa--GCGGagcUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 3374 0.68 0.667783
Target:  5'- gCGGaacaaUGUCGACGggcgUCGCCgucguugCGGGCa- -3'
miRNA:   3'- gGCC-----AUAGCUGCa---AGCGGa------GCUCGcg -5'
24263 3' -54.4 NC_005263.2 + 41788 0.68 0.667783
Target:  5'- -aGcGUAUCGgcACGUUUGCaaacCGGGCGCg -3'
miRNA:   3'- ggC-CAUAGC--UGCAAGCGga--GCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.