Results 41 - 48 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24263 | 5' | -53.7 | NC_005263.2 | + | 16830 | 0.72 | 0.406851 |
Target: 5'- -cGCGCUCGAcgcguucaaccagUCGAuGCGCGAG-ACGu -3' miRNA: 3'- aaCGCGAGCU-------------AGCU-CGCGUUCaUGCu -5' |
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24263 | 5' | -53.7 | NC_005263.2 | + | 3354 | 0.71 | 0.437164 |
Target: 5'- -cGCGCgCGGUCGAGCGaccagacAGUGCGc -3' miRNA: 3'- aaCGCGaGCUAGCUCGCgu-----UCAUGCu -5' |
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24263 | 5' | -53.7 | NC_005263.2 | + | 6703 | 0.69 | 0.531799 |
Target: 5'- -aGUGCUugCGGUCGGGCGCAugcuCGAg -3' miRNA: 3'- aaCGCGA--GCUAGCUCGCGUucauGCU- -5' |
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24263 | 5' | -53.7 | NC_005263.2 | + | 38461 | 0.68 | 0.5875 |
Target: 5'- aUUGCGCUCGA-C-AGCGCAAGccaGAu -3' miRNA: 3'- -AACGCGAGCUaGcUCGCGUUCaugCU- -5' |
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24263 | 5' | -53.7 | NC_005263.2 | + | 7322 | 0.68 | 0.632823 |
Target: 5'- aUGCGCUCGAUCagcaucGCGUucAGGaGCGAc -3' miRNA: 3'- aACGCGAGCUAGcu----CGCG--UUCaUGCU- -5' |
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24263 | 5' | -53.7 | NC_005263.2 | + | 45854 | 0.67 | 0.648717 |
Target: 5'- cUGCGCUCGAacaacuacacguacaUCG-GCGCGuacGCGAa -3' miRNA: 3'- aACGCGAGCU---------------AGCuCGCGUucaUGCU- -5' |
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24263 | 5' | -53.7 | NC_005263.2 | + | 15279 | 0.67 | 0.655522 |
Target: 5'- -gGCGCU-GAa-GGGCGCcGAGUACGAg -3' miRNA: 3'- aaCGCGAgCUagCUCGCG-UUCAUGCU- -5' |
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24263 | 5' | -53.7 | NC_005263.2 | + | 32103 | 0.66 | 0.755138 |
Target: 5'- -gGCGUcggugCGAUCGAGCGCuu---CGAg -3' miRNA: 3'- aaCGCGa----GCUAGCUCGCGuucauGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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