miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24263 5' -53.7 NC_005263.2 + 30420 0.66 0.722684
Target:  5'- cUGCaGCaggucggugCGGUCGAGCGCGAGcaGCGu -3'
miRNA:   3'- aACG-CGa--------GCUAGCUCGCGUUCa-UGCu -5'
24263 5' -53.7 NC_005263.2 + 38402 0.66 0.711657
Target:  5'- -aGCGCgccgcagCGGUCGAgcaggcaaaGCGCGAcGUGCGu -3'
miRNA:   3'- aaCGCGa------GCUAGCU---------CGCGUU-CAUGCu -5'
24263 5' -53.7 NC_005263.2 + 9214 0.66 0.711657
Target:  5'- -gGCGCUCGuaCG-GCGCGcGGUACGu -3'
miRNA:   3'- aaCGCGAGCuaGCuCGCGU-UCAUGCu -5'
24263 5' -53.7 NC_005263.2 + 2166 0.66 0.711657
Target:  5'- -gGCGCU-GAUCcGGCGCGAG-ACGc -3'
miRNA:   3'- aaCGCGAgCUAGcUCGCGUUCaUGCu -5'
24263 5' -53.7 NC_005263.2 + 10325 0.67 0.689367
Target:  5'- -cGaCGCUCG-UCGAucucGCGCAGGcGCGGc -3'
miRNA:   3'- aaC-GCGAGCuAGCU----CGCGUUCaUGCU- -5'
24263 5' -53.7 NC_005263.2 + 36557 0.67 0.678128
Target:  5'- ---aGCUCG-UCGAGCGCGgcaaGGUgACGAc -3'
miRNA:   3'- aacgCGAGCuAGCUCGCGU----UCA-UGCU- -5'
24263 5' -53.7 NC_005263.2 + 43451 0.69 0.565039
Target:  5'- aUGCGCagauugUCGAUaccgucagCGGGCGCGuuugggAGUACGAa -3'
miRNA:   3'- aACGCG------AGCUA--------GCUCGCGU------UCAUGCU- -5'
24263 5' -53.7 NC_005263.2 + 6578 0.67 0.644178
Target:  5'- -cGCGUUUGcgCaGGCGCAAGUAguCGAc -3'
miRNA:   3'- aaCGCGAGCuaGcUCGCGUUCAU--GCU- -5'
24263 5' -53.7 NC_005263.2 + 9651 0.67 0.644178
Target:  5'- cUUGCGCU--GUCGAGCGCAAuGU-CGc -3'
miRNA:   3'- -AACGCGAgcUAGCUCGCGUU-CAuGCu -5'
24263 5' -53.7 NC_005263.2 + 23900 0.67 0.644178
Target:  5'- -cGCGCUCG--UGAGCGCGcccGCGAg -3'
miRNA:   3'- aaCGCGAGCuaGCUCGCGUucaUGCU- -5'
24263 5' -53.7 NC_005263.2 + 26457 0.67 0.655522
Target:  5'- -aGCGCUUGGU---GCGCGAGUGCc- -3'
miRNA:   3'- aaCGCGAGCUAgcuCGCGUUCAUGcu -5'
24263 5' -53.7 NC_005263.2 + 27106 0.67 0.666842
Target:  5'- -gGCGCuUCGA-CGGGCGCG---GCGAa -3'
miRNA:   3'- aaCGCG-AGCUaGCUCGCGUucaUGCU- -5'
24263 5' -53.7 NC_005263.2 + 42902 0.69 0.565039
Target:  5'- -cGCGCUCGccUGGaCGCGAGUGCGc -3'
miRNA:   3'- aaCGCGAGCuaGCUcGCGUUCAUGCu -5'
24263 5' -53.7 NC_005263.2 + 39082 0.69 0.55389
Target:  5'- -cGCGCUUcGUUGAGCcggacgGCGAGUACGc -3'
miRNA:   3'- aaCGCGAGcUAGCUCG------CGUUCAUGCu -5'
24263 5' -53.7 NC_005263.2 + 687 0.7 0.499292
Target:  5'- -cGUGCUCGGU-GAGCGCGAucGUGCc- -3'
miRNA:   3'- aaCGCGAGCUAgCUCGCGUU--CAUGcu -5'
24263 5' -53.7 NC_005263.2 + 7910 0.71 0.427243
Target:  5'- -aGCGCUCGAUCGAauGCGCAcgcaucuucucGGUGa-- -3'
miRNA:   3'- aaCGCGAGCUAGCU--CGCGU-----------UCAUgcu -5'
24263 5' -53.7 NC_005263.2 + 29159 0.71 0.425275
Target:  5'- cUGCGCUCGuaaccggcgcgcUCGAGCGCucGUGCc- -3'
miRNA:   3'- aACGCGAGCu-----------AGCUCGCGuuCAUGcu -5'
24263 5' -53.7 NC_005263.2 + 2502 0.72 0.407808
Target:  5'- cUGC-CUCGAgaUCGGGCGCGAcGUACa- -3'
miRNA:   3'- aACGcGAGCU--AGCUCGCGUU-CAUGcu -5'
24263 5' -53.7 NC_005263.2 + 14879 0.76 0.220996
Target:  5'- -cGCGCagcuugUCGGcCGAGUGCAGGUGCGGc -3'
miRNA:   3'- aaCGCG------AGCUaGCUCGCGUUCAUGCU- -5'
24263 5' -53.7 NC_005263.2 + 9728 0.66 0.751941
Target:  5'- cUUGCGCUCGuucgccacagcaguGUCGAuCGC-GGUGCGc -3'
miRNA:   3'- -AACGCGAGC--------------UAGCUcGCGuUCAUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.