miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24265 3' -51.9 NC_005263.2 + 992 0.66 0.853019
Target:  5'- cGGCGCUUCGUUucaucgGGCGGCguguuggcugcuuccGCCUUaUCa -3'
miRNA:   3'- cCUGCGAAGUAG------UCGUCG---------------UGGAAcAG- -5'
24265 3' -51.9 NC_005263.2 + 884 0.66 0.84948
Target:  5'- cGGCGCUUCGuUCAGC-GCGgCg-GUCg -3'
miRNA:   3'- cCUGCGAAGU-AGUCGuCGUgGaaCAG- -5'
24265 3' -51.9 NC_005263.2 + 17338 0.66 0.840461
Target:  5'- cGGugGCUUCGacguUCGGCAuCGCg--GUCg -3'
miRNA:   3'- -CCugCGAAGU----AGUCGUcGUGgaaCAG- -5'
24265 3' -51.9 NC_005263.2 + 672 0.66 0.840461
Target:  5'- -aACGCcUCAUCguAGC-GCGCCUUGcCg -3'
miRNA:   3'- ccUGCGaAGUAG--UCGuCGUGGAACaG- -5'
24265 3' -51.9 NC_005263.2 + 24549 0.66 0.821718
Target:  5'- cGGCGCgggCggCGGCGGCugCgccacgGUCg -3'
miRNA:   3'- cCUGCGaa-GuaGUCGUCGugGaa----CAG- -5'
24265 3' -51.9 NC_005263.2 + 30206 0.66 0.812016
Target:  5'- uGAUGCUg-AUCGGC-GCGCCgccgGUCg -3'
miRNA:   3'- cCUGCGAagUAGUCGuCGUGGaa--CAG- -5'
24265 3' -51.9 NC_005263.2 + 24599 0.67 0.802108
Target:  5'- cGGGCGCaggCggUGGCGGCGCag-GUCa -3'
miRNA:   3'- -CCUGCGaa-GuaGUCGUCGUGgaaCAG- -5'
24265 3' -51.9 NC_005263.2 + 18165 0.67 0.802108
Target:  5'- cGGCgGCggCGUUGGCGGCAUCgucuacgUGUCg -3'
miRNA:   3'- cCUG-CGaaGUAGUCGUCGUGGa------ACAG- -5'
24265 3' -51.9 NC_005263.2 + 15200 0.67 0.792007
Target:  5'- -cGCGCgaCGUCGGCaAGCGCUUccggGUCa -3'
miRNA:   3'- ccUGCGaaGUAGUCG-UCGUGGAa---CAG- -5'
24265 3' -51.9 NC_005263.2 + 25191 0.67 0.792007
Target:  5'- cGGGCGCg----CAGCuugGGCACCUccGUCc -3'
miRNA:   3'- -CCUGCGaaguaGUCG---UCGUGGAa-CAG- -5'
24265 3' -51.9 NC_005263.2 + 2406 0.67 0.781724
Target:  5'- cGGuCGCUUgGUCgccguacagcGGCAGCguGCCUUGg- -3'
miRNA:   3'- -CCuGCGAAgUAG----------UCGUCG--UGGAACag -5'
24265 3' -51.9 NC_005263.2 + 47475 0.67 0.760665
Target:  5'- cGGGCGU--CAcUGGCAGCACCggcccgcUGUCg -3'
miRNA:   3'- -CCUGCGaaGUaGUCGUCGUGGa------ACAG- -5'
24265 3' -51.9 NC_005263.2 + 9426 0.67 0.760665
Target:  5'- cGGCGCU--GUUAGCcgcGCACCUUGaUCu -3'
miRNA:   3'- cCUGCGAagUAGUCGu--CGUGGAAC-AG- -5'
24265 3' -51.9 NC_005263.2 + 9489 0.68 0.734646
Target:  5'- uGACGCUUCAcgaugcccgcaaaCAGCAGCugUgucGUCg -3'
miRNA:   3'- cCUGCGAAGUa------------GUCGUCGugGaa-CAG- -5'
24265 3' -51.9 NC_005263.2 + 24782 0.68 0.71693
Target:  5'- cGGGCGg--CGUCGGCGGCucGCCgggcGUCg -3'
miRNA:   3'- -CCUGCgaaGUAGUCGUCG--UGGaa--CAG- -5'
24265 3' -51.9 NC_005263.2 + 37614 0.69 0.683125
Target:  5'- -uGCGCUUCGaCGGCaAGCACCUgcgCg -3'
miRNA:   3'- ccUGCGAAGUaGUCG-UCGUGGAacaG- -5'
24265 3' -51.9 NC_005263.2 + 1533 0.71 0.568773
Target:  5'- -aGCGUgaUCGUCAGCGGCACUUcGUUg -3'
miRNA:   3'- ccUGCGa-AGUAGUCGUCGUGGAaCAG- -5'
24265 3' -51.9 NC_005263.2 + 23611 0.71 0.568773
Target:  5'- uGACGU----UCGGCGGCACCgugGUCg -3'
miRNA:   3'- cCUGCGaaguAGUCGUCGUGGaa-CAG- -5'
24265 3' -51.9 NC_005263.2 + 15084 0.71 0.535101
Target:  5'- aGACGC---GUgAGCAGCACCgaGUCg -3'
miRNA:   3'- cCUGCGaagUAgUCGUCGUGGaaCAG- -5'
24265 3' -51.9 NC_005263.2 + 12590 0.73 0.449368
Target:  5'- cGGGCGCa--GUCGGC-GCGCCagUGUCa -3'
miRNA:   3'- -CCUGCGaagUAGUCGuCGUGGa-ACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.