miRNA: 3'- -CCugCGAAGU----AGUCGUcGUGgaaCAG- -5'
miRNA: 3'- cCUGCGAAGU-AGUCGuCGUgGaaCAG- -5'
miRNA: 3'- cCUGCGAAGUAG------UCGUCG---------------UGGAAcAG- -5'
Results 21 - 23 of 23 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 24265 | 3' | -51.9 | NC_005263.2 | + | 17338 | 0.66 | 0.840461 |
|
Target: 5'- cGGugGCUUCGacguUCGGCAuCGCg--GUCg -3' miRNA: 3'- -CCugCGAAGU----AGUCGUcGUGgaaCAG- -5' |
|||||||
| 24265 | 3' | -51.9 | NC_005263.2 | + | 884 | 0.66 | 0.84948 |
|
Target: 5'- cGGCGCUUCGuUCAGC-GCGgCg-GUCg -3' miRNA: 3'- cCUGCGAAGU-AGUCGuCGUgGaaCAG- -5' |
|||||||
| 24265 | 3' | -51.9 | NC_005263.2 | + | 992 | 0.66 | 0.853019 |
|
Target: 5'- cGGCGCUUCGUUucaucgGGCGGCguguuggcugcuuccGCCUUaUCa -3' miRNA: 3'- cCUGCGAAGUAG------UCGUCG---------------UGGAAcAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home