miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24265 5' -55.8 NC_005263.2 + 45825 0.66 0.659259
Target:  5'- cGGcGCACGAccUGCCGaCGGCGaaCGCGc- -3'
miRNA:   3'- -CCuUGUGCU--AUGGCcGCCGC--GCGUaa -5'
24265 5' -55.8 NC_005263.2 + 5262 0.66 0.659259
Target:  5'- cGAACGUGAUGCgguaCGGgGGCGUGCu-- -3'
miRNA:   3'- cCUUGUGCUAUG----GCCgCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 23789 0.66 0.659259
Target:  5'- cGGAAuUGCGAUgcccguGCCGGCGGC-CGUc-- -3'
miRNA:   3'- -CCUU-GUGCUA------UGGCCGCCGcGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 1422 0.66 0.659259
Target:  5'- cGGcGCGCGccGCCuuGGCuGCGCGCGa- -3'
miRNA:   3'- -CCuUGUGCuaUGG--CCGcCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 20336 0.66 0.659259
Target:  5'- -aAGCAUGGccUGCCgccgcaccucGGgGGCGCGCAUg -3'
miRNA:   3'- ccUUGUGCU--AUGG----------CCgCCGCGCGUAa -5'
24265 5' -55.8 NC_005263.2 + 30145 0.66 0.658151
Target:  5'- uGGcGCugGAUGCCGuucacgaGCuGGCGCGgGUc -3'
miRNA:   3'- -CCuUGugCUAUGGC-------CG-CCGCGCgUAa -5'
24265 5' -55.8 NC_005263.2 + 32306 0.66 0.648172
Target:  5'- -cGACACGGUGUCGGaCGagcaGCGCGCAg- -3'
miRNA:   3'- ccUUGUGCUAUGGCC-GC----CGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 25019 0.66 0.648172
Target:  5'- cGGugGCGGUGgcugCGGUGGCGUGUAc- -3'
miRNA:   3'- cCUugUGCUAUg---GCCGCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 35458 0.66 0.648172
Target:  5'- cGGccGACgACGAUAUCGaCGGCGUGCu-- -3'
miRNA:   3'- -CC--UUG-UGCUAUGGCcGCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 13283 0.66 0.63707
Target:  5'- -cGACACcg-ACUGGCGcGUGCGCAg- -3'
miRNA:   3'- ccUUGUGcuaUGGCCGC-CGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 17309 0.66 0.63707
Target:  5'- cGAGCACGucgccGCCGaGCaGCaGCGCAUg -3'
miRNA:   3'- cCUUGUGCua---UGGC-CGcCG-CGCGUAa -5'
24265 5' -55.8 NC_005263.2 + 19058 0.66 0.63707
Target:  5'- aGGACGCGccGCgCGGCcuGCGCGCGc- -3'
miRNA:   3'- cCUUGUGCuaUG-GCCGc-CGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 17579 0.66 0.63707
Target:  5'- -cAACACGAacgGCggCGGCcaaGGCGCGCAg- -3'
miRNA:   3'- ccUUGUGCUa--UG--GCCG---CCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 23181 0.66 0.63707
Target:  5'- cGGACugGAUAuCUGGgGGCGCa---- -3'
miRNA:   3'- cCUUGugCUAU-GGCCgCCGCGcguaa -5'
24265 5' -55.8 NC_005263.2 + 13746 0.66 0.63596
Target:  5'- cGGGGCAC--UGCCGGUuuacacggcgacaGGCGCGUc-- -3'
miRNA:   3'- -CCUUGUGcuAUGGCCG-------------CCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 1630 0.66 0.614863
Target:  5'- cGAACGCGucgUCGGCGGCGUaGCc-- -3'
miRNA:   3'- cCUUGUGCuauGGCCGCCGCG-CGuaa -5'
24265 5' -55.8 NC_005263.2 + 40260 0.66 0.614863
Target:  5'- uGGGGCGCGGUGaucuuccgcCCGuucGCGGuUGCGCAg- -3'
miRNA:   3'- -CCUUGUGCUAU---------GGC---CGCC-GCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 15466 0.66 0.614863
Target:  5'- uGAGCgACGAUuuGCCGugcuGCGGCgGCGCGg- -3'
miRNA:   3'- cCUUG-UGCUA--UGGC----CGCCG-CGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 22464 0.66 0.611535
Target:  5'- gGGAGgcguuCACGAUugcuucuccuugucGCCGGCGGCG-GCc-- -3'
miRNA:   3'- -CCUU-----GUGCUA--------------UGGCCGCCGCgCGuaa -5'
24265 5' -55.8 NC_005263.2 + 6154 0.67 0.608209
Target:  5'- -aAACACGAgaauauucucgugcGCCuugaGCGGCGCGCGUUu -3'
miRNA:   3'- ccUUGUGCUa-------------UGGc---CGCCGCGCGUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.