Results 21 - 40 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24265 | 5' | -55.8 | NC_005263.2 | + | 20940 | 0.67 | 0.548898 |
Target: 5'- cGAAUGCGGUGaugaCGGCcGCGCGCu-- -3' miRNA: 3'- cCUUGUGCUAUg---GCCGcCGCGCGuaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 10287 | 0.67 | 0.548898 |
Target: 5'- cGGcGACAUGAgcGCCGGauGCGCGCc-- -3' miRNA: 3'- -CC-UUGUGCUa-UGGCCgcCGCGCGuaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 31552 | 0.67 | 0.570705 |
Target: 5'- -uGGCGuCGcUGCCcaGGCGGCGCGCcgUg -3' miRNA: 3'- ccUUGU-GCuAUGG--CCGCCGCGCGuaA- -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 578 | 0.67 | 0.570705 |
Target: 5'- uGGAAUGCGAgAUCGGCaauGGCGC-CAUc -3' miRNA: 3'- -CCUUGUGCUaUGGCCG---CCGCGcGUAa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 1336 | 0.67 | 0.556504 |
Target: 5'- cGAACACGAucacggccggUugcagaaucuuuuuGCCGGCGGCggccuugaacgaGCGCAUg -3' miRNA: 3'- cCUUGUGCU----------A--------------UGGCCGCCG------------CGCGUAa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 6154 | 0.67 | 0.608209 |
Target: 5'- -aAACACGAgaauauucucgugcGCCuugaGCGGCGCGCGUUu -3' miRNA: 3'- ccUUGUGCUa-------------UGGc---CGCCGCGCGUAA- -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 21185 | 0.67 | 0.592717 |
Target: 5'- cGGACGCGG-ACgCGcGCGGCGCGgGc- -3' miRNA: 3'- cCUUGUGCUaUG-GC-CGCCGCGCgUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 19748 | 0.67 | 0.581689 |
Target: 5'- cGGcGCugGcgcGCUGGCGGCGCuCGUg -3' miRNA: 3'- -CCuUGugCua-UGGCCGCCGCGcGUAa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 27377 | 0.67 | 0.570705 |
Target: 5'- -cGGCGCGGcGgCGGcCGGCGCGCu-- -3' miRNA: 3'- ccUUGUGCUaUgGCC-GCCGCGCGuaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 39005 | 0.67 | 0.592717 |
Target: 5'- cGGcAACACGAUccaGCCGGguaugcCGGuCGCGCu-- -3' miRNA: 3'- -CC-UUGUGCUA---UGGCC------GCC-GCGCGuaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 26181 | 0.67 | 0.592717 |
Target: 5'- uGAGgACGGUcugcggccGCgCGGCGGCcGCGCGa- -3' miRNA: 3'- cCUUgUGCUA--------UG-GCCGCCG-CGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 45474 | 0.67 | 0.592717 |
Target: 5'- cGGcaAGCGCGAUgaACCGcGCGGUcggccugucGCGCAa- -3' miRNA: 3'- -CC--UUGUGCUA--UGGC-CGCCG---------CGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 5268 | 0.67 | 0.592717 |
Target: 5'- ----gGCGGUGCCGGCaGCG-GCAUc -3' miRNA: 3'- ccuugUGCUAUGGCCGcCGCgCGUAa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 853 | 0.67 | 0.575094 |
Target: 5'- cGAGCGCGGacagcguacccgucgUGCCGGcCGGCGCuuCGUUc -3' miRNA: 3'- cCUUGUGCU---------------AUGGCC-GCCGCGc-GUAA- -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 38124 | 0.67 | 0.570705 |
Target: 5'- -aGACgGCGA-ACCGGaCGGCGUGCGc- -3' miRNA: 3'- ccUUG-UGCUaUGGCC-GCCGCGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 36071 | 0.67 | 0.570705 |
Target: 5'- cGGAA-GCGAugUACCGGCGcaagcuugaGCGCGCcgUc -3' miRNA: 3'- -CCUUgUGCU--AUGGCCGC---------CGCGCGuaA- -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 7211 | 0.67 | 0.570705 |
Target: 5'- --cGCGCGAccaucGCCGGCgaccagaaGGCGCGCGc- -3' miRNA: 3'- ccuUGUGCUa----UGGCCG--------CCGCGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 32855 | 0.67 | 0.564139 |
Target: 5'- aGGACACGucaaacgaguucgauGUGCCGGCGgGCG-GCGa- -3' miRNA: 3'- cCUUGUGC---------------UAUGGCCGC-CGCgCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 36170 | 0.67 | 0.559772 |
Target: 5'- cGAACGuCGAUACCGGCcGGCuGC-CGg- -3' miRNA: 3'- cCUUGU-GCUAUGGCCG-CCG-CGcGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 13392 | 0.67 | 0.581689 |
Target: 5'- cGGGACACGAUcguguGCaGGCG-CGuCGCAUg -3' miRNA: 3'- -CCUUGUGCUA-----UGgCCGCcGC-GCGUAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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