miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24265 5' -55.8 NC_005263.2 + 24077 0.68 0.481176
Target:  5'- cGGACACGucgaccgauccgGCCGGCGGCG-GCu-- -3'
miRNA:   3'- cCUUGUGCua----------UGGCCGCCGCgCGuaa -5'
24265 5' -55.8 NC_005263.2 + 20895 0.68 0.50614
Target:  5'- aGGAggcGCACGGgaugacGCCGGaUGGCGUGUAc- -3'
miRNA:   3'- -CCU---UGUGCUa-----UGGCC-GCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 3285 0.68 0.50614
Target:  5'- aGGcAUACGcccuuucuccuuGUGCgcgCGGCGGCGCGCGg- -3'
miRNA:   3'- -CCuUGUGC------------UAUG---GCCGCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 10388 0.68 0.492546
Target:  5'- --cACGCGccggGCCGGCcggcgagcggguccGGCGCGCGUUc -3'
miRNA:   3'- ccuUGUGCua--UGGCCG--------------CCGCGCGUAA- -5'
24265 5' -55.8 NC_005263.2 + 31335 0.68 0.538091
Target:  5'- ----gGCGAUacGCCGGCGGCcgucagGCGCGa- -3'
miRNA:   3'- ccuugUGCUA--UGGCCGCCG------CGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 20400 0.68 0.538091
Target:  5'- cGAGCaagccuauGCGGccGCCGGCgccGGCGCGCAc- -3'
miRNA:   3'- cCUUG--------UGCUa-UGGCCG---CCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 1236 0.68 0.485296
Target:  5'- cGAGCGCGAUGucauCCGGCcaGGaUGCGCGa- -3'
miRNA:   3'- cCUUGUGCUAU----GGCCG--CC-GCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 43782 0.68 0.495669
Target:  5'- --uGCACGAUAUCGugcGCGGCGCGa--- -3'
miRNA:   3'- ccuUGUGCUAUGGC---CGCCGCGCguaa -5'
24265 5' -55.8 NC_005263.2 + 24795 0.68 0.495669
Target:  5'- cGGcuCGcCGGgcgUCGGCGGCGCGUAUUc -3'
miRNA:   3'- -CCuuGU-GCUau-GGCCGCCGCGCGUAA- -5'
24265 5' -55.8 NC_005263.2 + 39702 0.68 0.50614
Target:  5'- cGAGCGCGAgcuggaaaugGCCGGCGcGgGcCGCGUc -3'
miRNA:   3'- cCUUGUGCUa---------UGGCCGC-CgC-GCGUAa -5'
24265 5' -55.8 NC_005263.2 + 30440 0.68 0.516705
Target:  5'- cGAGCGCGAgcagcgugaGCgCGGCGGCcuuCGCGUUg -3'
miRNA:   3'- cCUUGUGCUa--------UG-GCCGCCGc--GCGUAA- -5'
24265 5' -55.8 NC_005263.2 + 46426 0.68 0.50614
Target:  5'- -cAAUAcCGA-ACUGGCGGCGCGCu-- -3'
miRNA:   3'- ccUUGU-GCUaUGGCCGCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 41068 0.68 0.527358
Target:  5'- -uGGCGCGAUGcgccauCCGuCGGCGCGCGa- -3'
miRNA:   3'- ccUUGUGCUAU------GGCcGCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 31239 0.68 0.516705
Target:  5'- aGGGGCGCuucGGUuCCGcGCGGCGCgGCGc- -3'
miRNA:   3'- -CCUUGUG---CUAuGGC-CGCCGCG-CGUaa -5'
24265 5' -55.8 NC_005263.2 + 26524 0.69 0.444901
Target:  5'- -cGGCGuCGAcGCCGGCGGCGaGCAc- -3'
miRNA:   3'- ccUUGU-GCUaUGGCCGCCGCgCGUaa -5'
24265 5' -55.8 NC_005263.2 + 34035 0.69 0.475028
Target:  5'- -cGACAUGG-GCCGGCgcGGCGCGCu-- -3'
miRNA:   3'- ccUUGUGCUaUGGCCG--CCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 27696 0.69 0.454827
Target:  5'- --uGCGCGccggcGCCGGCGGC-CGCAUa -3'
miRNA:   3'- ccuUGUGCua---UGGCCGCCGcGCGUAa -5'
24265 5' -55.8 NC_005263.2 + 21629 0.69 0.435099
Target:  5'- uGGAGCGCGGcGCCGGaaugGGCgaauuggguuGCGCAa- -3'
miRNA:   3'- -CCUUGUGCUaUGGCCg---CCG----------CGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 29277 0.69 0.464871
Target:  5'- cGAACGCGGcaaugagcUGCaCGGCGGCcgggucggcauGCGCAUc -3'
miRNA:   3'- cCUUGUGCU--------AUG-GCCGCCG-----------CGCGUAa -5'
24265 5' -55.8 NC_005263.2 + 1558 0.7 0.388037
Target:  5'- uGAACACGAaGCCGGCcgacaGCGUGCcgUc -3'
miRNA:   3'- cCUUGUGCUaUGGCCGc----CGCGCGuaA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.