miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24265 5' -55.8 NC_005263.2 + 12472 1.08 0.000815
Target:  5'- cGGAACACGAUACCGGCGGCGCGCAUUg -3'
miRNA:   3'- -CCUUGUGCUAUGGCCGCCGCGCGUAA- -5'
24265 5' -55.8 NC_005263.2 + 44772 0.85 0.039281
Target:  5'- --cGCGCGGcGCCGGCGGCGCGCAg- -3'
miRNA:   3'- ccuUGUGCUaUGGCCGCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 24685 0.78 0.118576
Target:  5'- gGGGGCGcCGGUAaCGGCGGCGCGCc-- -3'
miRNA:   3'- -CCUUGU-GCUAUgGCCGCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 44057 0.78 0.125473
Target:  5'- uGGAACACGGUGCugCGGCGGCaGCGgGg- -3'
miRNA:   3'- -CCUUGUGCUAUG--GCCGCCG-CGCgUaa -5'
24265 5' -55.8 NC_005263.2 + 27871 0.78 0.132741
Target:  5'- cGGAAUcagugGAUaagGCCGGCGGCGCGCAg- -3'
miRNA:   3'- -CCUUGug---CUA---UGGCCGCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 2333 0.77 0.140395
Target:  5'- cGGAACGCGAgcACCGuGCGGCcguuGCGCAg- -3'
miRNA:   3'- -CCUUGUGCUa-UGGC-CGCCG----CGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 25694 0.77 0.144372
Target:  5'- cGGACACGGcgaGCaCGGCGGCGCGUAc- -3'
miRNA:   3'- cCUUGUGCUa--UG-GCCGCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 28396 0.76 0.161326
Target:  5'- cGAcCACGAaGCCGGcCGGCGUGCAg- -3'
miRNA:   3'- cCUuGUGCUaUGGCC-GCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 10168 0.76 0.165836
Target:  5'- cGGuugcGCAcCGGcUGCCGGCGGCGCGCc-- -3'
miRNA:   3'- -CCu---UGU-GCU-AUGGCCGCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 35759 0.76 0.179562
Target:  5'- cGGGCGCGGUuacugcgGCUGGCGGCGUGCc-- -3'
miRNA:   3'- cCUUGUGCUA-------UGGCCGCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 6602 0.75 0.190122
Target:  5'- -cGACGCGAUcgcguUCGGCGGCGCGCu-- -3'
miRNA:   3'- ccUUGUGCUAu----GGCCGCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 17887 0.75 0.21175
Target:  5'- cGAACGaucaGucgACCGGCGGCGCGCc-- -3'
miRNA:   3'- cCUUGUg---Cua-UGGCCGCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 3191 0.75 0.21175
Target:  5'- uGAGCACGAgGCCGGUgagccggcccGGCGCGCc-- -3'
miRNA:   3'- cCUUGUGCUaUGGCCG----------CCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 16565 0.74 0.217478
Target:  5'- uGGGCAgCGAcgccaagGCCGGCGGCGaCGCGUUc -3'
miRNA:   3'- cCUUGU-GCUa------UGGCCGCCGC-GCGUAA- -5'
24265 5' -55.8 NC_005263.2 + 17737 0.74 0.229332
Target:  5'- uGGGGCucgcacuCGGcGCCGGCGGCaGCGCGg- -3'
miRNA:   3'- -CCUUGu------GCUaUGGCCGCCG-CGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 11517 0.74 0.229332
Target:  5'- uGGucgcGCGCGAUGaaGGCGGCGCGguUc -3'
miRNA:   3'- -CCu---UGUGCUAUggCCGCCGCGCguAa -5'
24265 5' -55.8 NC_005263.2 + 45348 0.73 0.26136
Target:  5'- cGAACACGAccgGCaCGGCGGC-CGCGa- -3'
miRNA:   3'- cCUUGUGCUa--UG-GCCGCCGcGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 35522 0.73 0.268187
Target:  5'- uGGcGCGcCGAcugcgcCCGGCGGCGCGCGg- -3'
miRNA:   3'- -CCuUGU-GCUau----GGCCGCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 44118 0.73 0.268187
Target:  5'- aGGuGCGC--UGCuCGGCGGCGCGCGc- -3'
miRNA:   3'- -CCuUGUGcuAUG-GCCGCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 48006 0.73 0.282272
Target:  5'- -cGACACGAcUACCGGCaccGGCGgGCAg- -3'
miRNA:   3'- ccUUGUGCU-AUGGCCG---CCGCgCGUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.