miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24265 5' -55.8 NC_005263.2 + 9551 0.72 0.289532
Target:  5'- -cGACGCGGcgcucgcggcuUGCCaGGCGGCGCGCu-- -3'
miRNA:   3'- ccUUGUGCU-----------AUGG-CCGCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 29214 0.72 0.296937
Target:  5'- aGGccGGCGCGuauuUGCCGuCGGCGCGCAg- -3'
miRNA:   3'- -CC--UUGUGCu---AUGGCcGCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 24974 0.72 0.320031
Target:  5'- cGGcAACACGAUGCUGGCcGGCcuggcCGCAa- -3'
miRNA:   3'- -CC-UUGUGCUAUGGCCG-CCGc----GCGUaa -5'
24265 5' -55.8 NC_005263.2 + 19372 0.72 0.328023
Target:  5'- cGGAUGCGcauUGCCgucagccucGGCGGCGCGCAg- -3'
miRNA:   3'- cCUUGUGCu--AUGG---------CCGCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 14254 0.72 0.328023
Target:  5'- cGGGCugGcUugCGGCGGCcgGCGCAa- -3'
miRNA:   3'- cCUUGugCuAugGCCGCCG--CGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 6040 0.71 0.344446
Target:  5'- cGAGCACGccccguucGuuGGCGGCGCGCu-- -3'
miRNA:   3'- cCUUGUGCua------UggCCGCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 35985 0.71 0.344446
Target:  5'- uGGAGCGCGcGUAauGGCGcGCGCGCc-- -3'
miRNA:   3'- -CCUUGUGC-UAUggCCGC-CGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 4076 0.71 0.347801
Target:  5'- cGGAACGCGGcgaagucgccacccuUGCCGaGCGGaCGCGaCAg- -3'
miRNA:   3'- -CCUUGUGCU---------------AUGGC-CGCC-GCGC-GUaa -5'
24265 5' -55.8 NC_005263.2 + 46683 0.71 0.361452
Target:  5'- --cGCGCGcaGCCaaGGCGGCGCGCGc- -3'
miRNA:   3'- ccuUGUGCuaUGG--CCGCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 39345 0.71 0.361452
Target:  5'- cGGGGCugGcaGCCgauucgcucggcGGCGGCGCGCu-- -3'
miRNA:   3'- -CCUUGugCuaUGG------------CCGCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 22132 0.71 0.361452
Target:  5'- -aAGCGCGAUcGCCGGaCGGgGCGCu-- -3'
miRNA:   3'- ccUUGUGCUA-UGGCC-GCCgCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 39695 0.71 0.370171
Target:  5'- cGAACuucACGGUcGCCgaGGCGGCGCGCu-- -3'
miRNA:   3'- cCUUG---UGCUA-UGG--CCGCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 46158 0.7 0.379034
Target:  5'- -cGACGCGGuUGCCGGCgucgccggugccGGCGCGCu-- -3'
miRNA:   3'- ccUUGUGCU-AUGGCCG------------CCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 29062 0.7 0.388037
Target:  5'- -cGGCGCGu--CCucggGGCGGCGCGCAUc -3'
miRNA:   3'- ccUUGUGCuauGG----CCGCCGCGCGUAa -5'
24265 5' -55.8 NC_005263.2 + 12548 0.7 0.388037
Target:  5'- ---uCGCGGcgGCCGGCGGCGC-CGUa -3'
miRNA:   3'- ccuuGUGCUa-UGGCCGCCGCGcGUAa -5'
24265 5' -55.8 NC_005263.2 + 1558 0.7 0.388037
Target:  5'- uGAACACGAaGCCGGCcgacaGCGUGCcgUc -3'
miRNA:   3'- cCUUGUGCUaUGGCCGc----CGCGCGuaA- -5'
24265 5' -55.8 NC_005263.2 + 3338 0.7 0.388037
Target:  5'- --uGCGCGccGCCGGCGccGCGCGCGg- -3'
miRNA:   3'- ccuUGUGCuaUGGCCGC--CGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 10874 0.7 0.39718
Target:  5'- cGGAACuCGGcACCGGCG-CGCGUcgUg -3'
miRNA:   3'- -CCUUGuGCUaUGGCCGCcGCGCGuaA- -5'
24265 5' -55.8 NC_005263.2 + 24939 0.7 0.39718
Target:  5'- cGGugGCGGcggaCGGCGGUGCGCGg- -3'
miRNA:   3'- cCUugUGCUaug-GCCGCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 13354 0.7 0.39718
Target:  5'- --uACACaGAUGCgGGCGGCGCGa--- -3'
miRNA:   3'- ccuUGUG-CUAUGgCCGCCGCGCguaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.