miRNA display CGI


Results 61 - 80 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24265 5' -55.8 NC_005263.2 + 39702 0.68 0.50614
Target:  5'- cGAGCGCGAgcuggaaaugGCCGGCGcGgGcCGCGUc -3'
miRNA:   3'- cCUUGUGCUa---------UGGCCGC-CgC-GCGUAa -5'
24265 5' -55.8 NC_005263.2 + 30440 0.68 0.516705
Target:  5'- cGAGCGCGAgcagcgugaGCgCGGCGGCcuuCGCGUUg -3'
miRNA:   3'- cCUUGUGCUa--------UG-GCCGCCGc--GCGUAA- -5'
24265 5' -55.8 NC_005263.2 + 31239 0.68 0.516705
Target:  5'- aGGGGCGCuucGGUuCCGcGCGGCGCgGCGc- -3'
miRNA:   3'- -CCUUGUG---CUAuGGC-CGCCGCG-CGUaa -5'
24265 5' -55.8 NC_005263.2 + 41068 0.68 0.527358
Target:  5'- -uGGCGCGAUGcgccauCCGuCGGCGCGCGa- -3'
miRNA:   3'- ccUUGUGCUAU------GGCcGCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 20400 0.68 0.538091
Target:  5'- cGAGCaagccuauGCGGccGCCGGCgccGGCGCGCAc- -3'
miRNA:   3'- cCUUG--------UGCUa-UGGCCG---CCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 31335 0.68 0.538091
Target:  5'- ----gGCGAUacGCCGGCGGCcgucagGCGCGa- -3'
miRNA:   3'- ccuugUGCUA--UGGCCGCCG------CGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 20940 0.67 0.548898
Target:  5'- cGAAUGCGGUGaugaCGGCcGCGCGCu-- -3'
miRNA:   3'- cCUUGUGCUAUg---GCCGcCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 10287 0.67 0.548898
Target:  5'- cGGcGACAUGAgcGCCGGauGCGCGCc-- -3'
miRNA:   3'- -CC-UUGUGCUa-UGGCCgcCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 1336 0.67 0.556504
Target:  5'- cGAACACGAucacggccggUugcagaaucuuuuuGCCGGCGGCggccuugaacgaGCGCAUg -3'
miRNA:   3'- cCUUGUGCU----------A--------------UGGCCGCCG------------CGCGUAa -5'
24265 5' -55.8 NC_005263.2 + 36170 0.67 0.559772
Target:  5'- cGAACGuCGAUACCGGCcGGCuGC-CGg- -3'
miRNA:   3'- cCUUGU-GCUAUGGCCG-CCG-CGcGUaa -5'
24265 5' -55.8 NC_005263.2 + 32855 0.67 0.564139
Target:  5'- aGGACACGucaaacgaguucgauGUGCCGGCGgGCG-GCGa- -3'
miRNA:   3'- cCUUGUGC---------------UAUGGCCGC-CGCgCGUaa -5'
24265 5' -55.8 NC_005263.2 + 31552 0.67 0.570705
Target:  5'- -uGGCGuCGcUGCCcaGGCGGCGCGCcgUg -3'
miRNA:   3'- ccUUGU-GCuAUGG--CCGCCGCGCGuaA- -5'
24265 5' -55.8 NC_005263.2 + 38124 0.67 0.570705
Target:  5'- -aGACgGCGA-ACCGGaCGGCGUGCGc- -3'
miRNA:   3'- ccUUG-UGCUaUGGCC-GCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 7211 0.67 0.570705
Target:  5'- --cGCGCGAccaucGCCGGCgaccagaaGGCGCGCGc- -3'
miRNA:   3'- ccuUGUGCUa----UGGCCG--------CCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 578 0.67 0.570705
Target:  5'- uGGAAUGCGAgAUCGGCaauGGCGC-CAUc -3'
miRNA:   3'- -CCUUGUGCUaUGGCCG---CCGCGcGUAa -5'
24265 5' -55.8 NC_005263.2 + 27377 0.67 0.570705
Target:  5'- -cGGCGCGGcGgCGGcCGGCGCGCu-- -3'
miRNA:   3'- ccUUGUGCUaUgGCC-GCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 36071 0.67 0.570705
Target:  5'- cGGAA-GCGAugUACCGGCGcaagcuugaGCGCGCcgUc -3'
miRNA:   3'- -CCUUgUGCU--AUGGCCGC---------CGCGCGuaA- -5'
24265 5' -55.8 NC_005263.2 + 853 0.67 0.575094
Target:  5'- cGAGCGCGGacagcguacccgucgUGCCGGcCGGCGCuuCGUUc -3'
miRNA:   3'- cCUUGUGCU---------------AUGGCC-GCCGCGc-GUAA- -5'
24265 5' -55.8 NC_005263.2 + 13392 0.67 0.581689
Target:  5'- cGGGACACGAUcguguGCaGGCG-CGuCGCAUg -3'
miRNA:   3'- -CCUUGUGCUA-----UGgCCGCcGC-GCGUAa -5'
24265 5' -55.8 NC_005263.2 + 19748 0.67 0.581689
Target:  5'- cGGcGCugGcgcGCUGGCGGCGCuCGUg -3'
miRNA:   3'- -CCuUGugCua-UGGCCGCCGCGcGUAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.