miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24265 5' -55.8 NC_005263.2 + 9551 0.72 0.289532
Target:  5'- -cGACGCGGcgcucgcggcuUGCCaGGCGGCGCGCu-- -3'
miRNA:   3'- ccUUGUGCU-----------AUGG-CCGCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 10168 0.76 0.165836
Target:  5'- cGGuugcGCAcCGGcUGCCGGCGGCGCGCc-- -3'
miRNA:   3'- -CCu---UGU-GCU-AUGGCCGCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 10287 0.67 0.548898
Target:  5'- cGGcGACAUGAgcGCCGGauGCGCGCc-- -3'
miRNA:   3'- -CC-UUGUGCUa-UGGCCgcCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 10388 0.68 0.492546
Target:  5'- --cACGCGccggGCCGGCcggcgagcggguccGGCGCGCGUUc -3'
miRNA:   3'- ccuUGUGCua--UGGCCG--------------CCGCGCGUAA- -5'
24265 5' -55.8 NC_005263.2 + 10874 0.7 0.39718
Target:  5'- cGGAACuCGGcACCGGCG-CGCGUcgUg -3'
miRNA:   3'- -CCUUGuGCUaUGGCCGCcGCGCGuaA- -5'
24265 5' -55.8 NC_005263.2 + 11517 0.74 0.229332
Target:  5'- uGGucgcGCGCGAUGaaGGCGGCGCGguUc -3'
miRNA:   3'- -CCu---UGUGCUAUggCCGCCGCGCguAa -5'
24265 5' -55.8 NC_005263.2 + 12472 1.08 0.000815
Target:  5'- cGGAACACGAUACCGGCGGCGCGCAUUg -3'
miRNA:   3'- -CCUUGUGCUAUGGCCGCCGCGCGUAA- -5'
24265 5' -55.8 NC_005263.2 + 12548 0.7 0.388037
Target:  5'- ---uCGCGGcgGCCGGCGGCGC-CGUa -3'
miRNA:   3'- ccuuGUGCUa-UGGCCGCCGCGcGUAa -5'
24265 5' -55.8 NC_005263.2 + 13283 0.66 0.63707
Target:  5'- -cGACACcg-ACUGGCGcGUGCGCAg- -3'
miRNA:   3'- ccUUGUGcuaUGGCCGC-CGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 13354 0.7 0.39718
Target:  5'- --uACACaGAUGCgGGCGGCGCGa--- -3'
miRNA:   3'- ccuUGUG-CUAUGgCCGCCGCGCguaa -5'
24265 5' -55.8 NC_005263.2 + 13392 0.67 0.581689
Target:  5'- cGGGACACGAUcguguGCaGGCG-CGuCGCAUg -3'
miRNA:   3'- -CCUUGUGCUA-----UGgCCGCcGC-GCGUAa -5'
24265 5' -55.8 NC_005263.2 + 13746 0.66 0.63596
Target:  5'- cGGGGCAC--UGCCGGUuuacacggcgacaGGCGCGUc-- -3'
miRNA:   3'- -CCUUGUGcuAUGGCCG-------------CCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 14254 0.72 0.328023
Target:  5'- cGGGCugGcUugCGGCGGCcgGCGCAa- -3'
miRNA:   3'- cCUUGugCuAugGCCGCCG--CGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 15466 0.66 0.614863
Target:  5'- uGAGCgACGAUuuGCCGugcuGCGGCgGCGCGg- -3'
miRNA:   3'- cCUUG-UGCUA--UGGC----CGCCG-CGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 16565 0.74 0.217478
Target:  5'- uGGGCAgCGAcgccaagGCCGGCGGCGaCGCGUUc -3'
miRNA:   3'- cCUUGU-GCUa------UGGCCGCCGC-GCGUAA- -5'
24265 5' -55.8 NC_005263.2 + 17309 0.66 0.63707
Target:  5'- cGAGCACGucgccGCCGaGCaGCaGCGCAUg -3'
miRNA:   3'- cCUUGUGCua---UGGC-CGcCG-CGCGUAa -5'
24265 5' -55.8 NC_005263.2 + 17579 0.66 0.63707
Target:  5'- -cAACACGAacgGCggCGGCcaaGGCGCGCAg- -3'
miRNA:   3'- ccUUGUGCUa--UG--GCCG---CCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 17737 0.74 0.229332
Target:  5'- uGGGGCucgcacuCGGcGCCGGCGGCaGCGCGg- -3'
miRNA:   3'- -CCUUGu------GCUaUGGCCGCCG-CGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 17887 0.75 0.21175
Target:  5'- cGAACGaucaGucgACCGGCGGCGCGCc-- -3'
miRNA:   3'- cCUUGUg---Cua-UGGCCGCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 19058 0.66 0.63707
Target:  5'- aGGACGCGccGCgCGGCcuGCGCGCGc- -3'
miRNA:   3'- cCUUGUGCuaUG-GCCGc-CGCGCGUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.