Results 41 - 60 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24265 | 5' | -55.8 | NC_005263.2 | + | 19372 | 0.72 | 0.328023 |
Target: 5'- cGGAUGCGcauUGCCgucagccucGGCGGCGCGCAg- -3' miRNA: 3'- cCUUGUGCu--AUGG---------CCGCCGCGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 19748 | 0.67 | 0.581689 |
Target: 5'- cGGcGCugGcgcGCUGGCGGCGCuCGUg -3' miRNA: 3'- -CCuUGugCua-UGGCCGCCGCGcGUAa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 20336 | 0.66 | 0.659259 |
Target: 5'- -aAGCAUGGccUGCCgccgcaccucGGgGGCGCGCAUg -3' miRNA: 3'- ccUUGUGCU--AUGG----------CCgCCGCGCGUAa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 20400 | 0.68 | 0.538091 |
Target: 5'- cGAGCaagccuauGCGGccGCCGGCgccGGCGCGCAc- -3' miRNA: 3'- cCUUG--------UGCUa-UGGCCG---CCGCGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 20855 | 0.7 | 0.415875 |
Target: 5'- cGGAGaccuaACGcuaucgGCCGGCGGCGCGa--- -3' miRNA: 3'- -CCUUg----UGCua----UGGCCGCCGCGCguaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 20895 | 0.68 | 0.50614 |
Target: 5'- aGGAggcGCACGGgaugacGCCGGaUGGCGUGUAc- -3' miRNA: 3'- -CCU---UGUGCUa-----UGGCC-GCCGCGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 20940 | 0.67 | 0.548898 |
Target: 5'- cGAAUGCGGUGaugaCGGCcGCGCGCu-- -3' miRNA: 3'- cCUUGUGCUAUg---GCCGcCGCGCGuaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 21185 | 0.67 | 0.592717 |
Target: 5'- cGGACGCGG-ACgCGcGCGGCGCGgGc- -3' miRNA: 3'- cCUUGUGCUaUG-GC-CGCCGCGCgUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 21629 | 0.69 | 0.435099 |
Target: 5'- uGGAGCGCGGcGCCGGaaugGGCgaauuggguuGCGCAa- -3' miRNA: 3'- -CCUUGUGCUaUGGCCg---CCG----------CGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 22132 | 0.71 | 0.361452 |
Target: 5'- -aAGCGCGAUcGCCGGaCGGgGCGCu-- -3' miRNA: 3'- ccUUGUGCUA-UGGCC-GCCgCGCGuaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 22464 | 0.66 | 0.611535 |
Target: 5'- gGGAGgcguuCACGAUugcuucuccuugucGCCGGCGGCG-GCc-- -3' miRNA: 3'- -CCUU-----GUGCUA--------------UGGCCGCCGCgCGuaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 23181 | 0.66 | 0.63707 |
Target: 5'- cGGACugGAUAuCUGGgGGCGCa---- -3' miRNA: 3'- cCUUGugCUAU-GGCCgCCGCGcguaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 23789 | 0.66 | 0.659259 |
Target: 5'- cGGAAuUGCGAUgcccguGCCGGCGGC-CGUc-- -3' miRNA: 3'- -CCUU-GUGCUA------UGGCCGCCGcGCGuaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 24077 | 0.68 | 0.481176 |
Target: 5'- cGGACACGucgaccgauccgGCCGGCGGCG-GCu-- -3' miRNA: 3'- cCUUGUGCua----------UGGCCGCCGCgCGuaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 24685 | 0.78 | 0.118576 |
Target: 5'- gGGGGCGcCGGUAaCGGCGGCGCGCc-- -3' miRNA: 3'- -CCUUGU-GCUAUgGCCGCCGCGCGuaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 24795 | 0.68 | 0.495669 |
Target: 5'- cGGcuCGcCGGgcgUCGGCGGCGCGUAUUc -3' miRNA: 3'- -CCuuGU-GCUau-GGCCGCCGCGCGUAA- -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 24939 | 0.7 | 0.39718 |
Target: 5'- cGGugGCGGcggaCGGCGGUGCGCGg- -3' miRNA: 3'- cCUugUGCUaug-GCCGCCGCGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 24974 | 0.72 | 0.320031 |
Target: 5'- cGGcAACACGAUGCUGGCcGGCcuggcCGCAa- -3' miRNA: 3'- -CC-UUGUGCUAUGGCCG-CCGc----GCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 25019 | 0.66 | 0.648172 |
Target: 5'- cGGugGCGGUGgcugCGGUGGCGUGUAc- -3' miRNA: 3'- cCUugUGCUAUg---GCCGCCGCGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 25694 | 0.77 | 0.144372 |
Target: 5'- cGGACACGGcgaGCaCGGCGGCGCGUAc- -3' miRNA: 3'- cCUUGUGCUa--UG-GCCGCCGCGCGUaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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