Results 101 - 106 of 106 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24265 | 5' | -55.8 | NC_005263.2 | + | 45825 | 0.66 | 0.659259 |
|
Target: 5'- cGGcGCACGAccUGCCGaCGGCGaaCGCGc- -3' miRNA: 3'- -CCuUGUGCU--AUGGCcGCCGC--GCGUaa -5' |
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| 24265 | 5' | -55.8 | NC_005263.2 | + | 46158 | 0.7 | 0.379034 |
|
Target: 5'- -cGACGCGGuUGCCGGCgucgccggugccGGCGCGCu-- -3' miRNA: 3'- ccUUGUGCU-AUGGCCG------------CCGCGCGuaa -5' |
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| 24265 | 5' | -55.8 | NC_005263.2 | + | 46426 | 0.68 | 0.50614 |
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Target: 5'- -cAAUAcCGA-ACUGGCGGCGCGCu-- -3' miRNA: 3'- ccUUGU-GCUaUGGCCGCCGCGCGuaa -5' |
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| 24265 | 5' | -55.8 | NC_005263.2 | + | 46683 | 0.71 | 0.361452 |
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Target: 5'- --cGCGCGcaGCCaaGGCGGCGCGCGc- -3' miRNA: 3'- ccuUGUGCuaUGG--CCGCCGCGCGUaa -5' |
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| 24265 | 5' | -55.8 | NC_005263.2 | + | 46833 | 0.7 | 0.425422 |
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Target: 5'- -cAACGCGc-GCCaGGCGGCGCGCc-- -3' miRNA: 3'- ccUUGUGCuaUGG-CCGCCGCGCGuaa -5' |
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| 24265 | 5' | -55.8 | NC_005263.2 | + | 48006 | 0.73 | 0.282272 |
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Target: 5'- -cGACACGAcUACCGGCaccGGCGgGCAg- -3' miRNA: 3'- ccUUGUGCU-AUGGCCG---CCGCgCGUaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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