miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24265 5' -55.8 NC_005263.2 + 48006 0.73 0.282272
Target:  5'- -cGACACGAcUACCGGCaccGGCGgGCAg- -3'
miRNA:   3'- ccUUGUGCU-AUGGCCG---CCGCgCGUaa -5'
24265 5' -55.8 NC_005263.2 + 46833 0.7 0.425422
Target:  5'- -cAACGCGc-GCCaGGCGGCGCGCc-- -3'
miRNA:   3'- ccUUGUGCuaUGG-CCGCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 46683 0.71 0.361452
Target:  5'- --cGCGCGcaGCCaaGGCGGCGCGCGc- -3'
miRNA:   3'- ccuUGUGCuaUGG--CCGCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 46426 0.68 0.50614
Target:  5'- -cAAUAcCGA-ACUGGCGGCGCGCu-- -3'
miRNA:   3'- ccUUGU-GCUaUGGCCGCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 46158 0.7 0.379034
Target:  5'- -cGACGCGGuUGCCGGCgucgccggugccGGCGCGCu-- -3'
miRNA:   3'- ccUUGUGCU-AUGGCCG------------CCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 45825 0.66 0.659259
Target:  5'- cGGcGCACGAccUGCCGaCGGCGaaCGCGc- -3'
miRNA:   3'- -CCuUGUGCU--AUGGCcGCCGC--GCGUaa -5'
24265 5' -55.8 NC_005263.2 + 45474 0.67 0.592717
Target:  5'- cGGcaAGCGCGAUgaACCGcGCGGUcggccugucGCGCAa- -3'
miRNA:   3'- -CC--UUGUGCUA--UGGC-CGCCG---------CGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 45348 0.73 0.26136
Target:  5'- cGAACACGAccgGCaCGGCGGC-CGCGa- -3'
miRNA:   3'- cCUUGUGCUa--UG-GCCGCCGcGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 44772 0.85 0.039281
Target:  5'- --cGCGCGGcGCCGGCGGCGCGCAg- -3'
miRNA:   3'- ccuUGUGCUaUGGCCGCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 44118 0.73 0.268187
Target:  5'- aGGuGCGC--UGCuCGGCGGCGCGCGc- -3'
miRNA:   3'- -CCuUGUGcuAUG-GCCGCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 44057 0.78 0.125473
Target:  5'- uGGAACACGGUGCugCGGCGGCaGCGgGg- -3'
miRNA:   3'- -CCUUGUGCUAUG--GCCGCCG-CGCgUaa -5'
24265 5' -55.8 NC_005263.2 + 43782 0.68 0.495669
Target:  5'- --uGCACGAUAUCGugcGCGGCGCGa--- -3'
miRNA:   3'- ccuUGUGCUAUGGC---CGCCGCGCguaa -5'
24265 5' -55.8 NC_005263.2 + 41068 0.68 0.527358
Target:  5'- -uGGCGCGAUGcgccauCCGuCGGCGCGCGa- -3'
miRNA:   3'- ccUUGUGCUAU------GGCcGCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 40785 0.67 0.603777
Target:  5'- uGAACGCGAUGCUGaucgaGCGcauCGCGCAg- -3'
miRNA:   3'- cCUUGUGCUAUGGC-----CGCc--GCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 40752 0.7 0.40646
Target:  5'- ---cCGCGAUcgucACCGGCGGCG-GCAa- -3'
miRNA:   3'- ccuuGUGCUA----UGGCCGCCGCgCGUaa -5'
24265 5' -55.8 NC_005263.2 + 40260 0.66 0.614863
Target:  5'- uGGGGCGCGGUGaucuuccgcCCGuucGCGGuUGCGCAg- -3'
miRNA:   3'- -CCUUGUGCUAU---------GGC---CGCC-GCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 39702 0.68 0.50614
Target:  5'- cGAGCGCGAgcuggaaaugGCCGGCGcGgGcCGCGUc -3'
miRNA:   3'- cCUUGUGCUa---------UGGCCGC-CgC-GCGUAa -5'
24265 5' -55.8 NC_005263.2 + 39695 0.71 0.370171
Target:  5'- cGAACuucACGGUcGCCgaGGCGGCGCGCu-- -3'
miRNA:   3'- cCUUG---UGCUA-UGG--CCGCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 39345 0.71 0.361452
Target:  5'- cGGGGCugGcaGCCgauucgcucggcGGCGGCGCGCu-- -3'
miRNA:   3'- -CCUUGugCuaUGG------------CCGCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 39005 0.67 0.592717
Target:  5'- cGGcAACACGAUccaGCCGGguaugcCGGuCGCGCu-- -3'
miRNA:   3'- -CC-UUGUGCUA---UGGCC------GCC-GCGCGuaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.