miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24265 5' -55.8 NC_005263.2 + 38124 0.67 0.570705
Target:  5'- -aGACgGCGA-ACCGGaCGGCGUGCGc- -3'
miRNA:   3'- ccUUG-UGCUaUGGCC-GCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 37925 0.7 0.415875
Target:  5'- cGGGcgcagGCGCGccGCCGGCagccGGUGCGCAa- -3'
miRNA:   3'- -CCU-----UGUGCuaUGGCCG----CCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 36170 0.67 0.559772
Target:  5'- cGAACGuCGAUACCGGCcGGCuGC-CGg- -3'
miRNA:   3'- cCUUGU-GCUAUGGCCG-CCG-CGcGUaa -5'
24265 5' -55.8 NC_005263.2 + 36071 0.67 0.570705
Target:  5'- cGGAA-GCGAugUACCGGCGcaagcuugaGCGCGCcgUc -3'
miRNA:   3'- -CCUUgUGCU--AUGGCCGC---------CGCGCGuaA- -5'
24265 5' -55.8 NC_005263.2 + 35985 0.71 0.344446
Target:  5'- uGGAGCGCGcGUAauGGCGcGCGCGCc-- -3'
miRNA:   3'- -CCUUGUGC-UAUggCCGC-CGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 35759 0.76 0.179562
Target:  5'- cGGGCGCGGUuacugcgGCUGGCGGCGUGCc-- -3'
miRNA:   3'- cCUUGUGCUA-------UGGCCGCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 35522 0.73 0.268187
Target:  5'- uGGcGCGcCGAcugcgcCCGGCGGCGCGCGg- -3'
miRNA:   3'- -CCuUGU-GCUau----GGCCGCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 35458 0.66 0.648172
Target:  5'- cGGccGACgACGAUAUCGaCGGCGUGCu-- -3'
miRNA:   3'- -CC--UUG-UGCUAUGGCcGCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 34035 0.69 0.475028
Target:  5'- -cGACAUGG-GCCGGCgcGGCGCGCu-- -3'
miRNA:   3'- ccUUGUGCUaUGGCCG--CCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 32855 0.67 0.564139
Target:  5'- aGGACACGucaaacgaguucgauGUGCCGGCGgGCG-GCGa- -3'
miRNA:   3'- cCUUGUGC---------------UAUGGCCGC-CGCgCGUaa -5'
24265 5' -55.8 NC_005263.2 + 32306 0.66 0.648172
Target:  5'- -cGACACGGUGUCGGaCGagcaGCGCGCAg- -3'
miRNA:   3'- ccUUGUGCUAUGGCC-GC----CGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 31615 0.7 0.415875
Target:  5'- cGGu-CGCGAcgGCCGcGCGGCGCaGCGc- -3'
miRNA:   3'- -CCuuGUGCUa-UGGC-CGCCGCG-CGUaa -5'
24265 5' -55.8 NC_005263.2 + 31552 0.67 0.570705
Target:  5'- -uGGCGuCGcUGCCcaGGCGGCGCGCcgUg -3'
miRNA:   3'- ccUUGU-GCuAUGG--CCGCCGCGCGuaA- -5'
24265 5' -55.8 NC_005263.2 + 31335 0.68 0.538091
Target:  5'- ----gGCGAUacGCCGGCGGCcgucagGCGCGa- -3'
miRNA:   3'- ccuugUGCUA--UGGCCGCCG------CGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 31239 0.68 0.516705
Target:  5'- aGGGGCGCuucGGUuCCGcGCGGCGCgGCGc- -3'
miRNA:   3'- -CCUUGUG---CUAuGGC-CGCCGCG-CGUaa -5'
24265 5' -55.8 NC_005263.2 + 30440 0.68 0.516705
Target:  5'- cGAGCGCGAgcagcgugaGCgCGGCGGCcuuCGCGUUg -3'
miRNA:   3'- cCUUGUGCUa--------UG-GCCGCCGc--GCGUAA- -5'
24265 5' -55.8 NC_005263.2 + 30145 0.66 0.658151
Target:  5'- uGGcGCugGAUGCCGuucacgaGCuGGCGCGgGUc -3'
miRNA:   3'- -CCuUGugCUAUGGC-------CG-CCGCGCgUAa -5'
24265 5' -55.8 NC_005263.2 + 29277 0.69 0.464871
Target:  5'- cGAACGCGGcaaugagcUGCaCGGCGGCcgggucggcauGCGCAUc -3'
miRNA:   3'- cCUUGUGCU--------AUG-GCCGCCG-----------CGCGUAa -5'
24265 5' -55.8 NC_005263.2 + 29214 0.72 0.296937
Target:  5'- aGGccGGCGCGuauuUGCCGuCGGCGCGCAg- -3'
miRNA:   3'- -CC--UUGUGCu---AUGGCcGCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 29062 0.7 0.388037
Target:  5'- -cGGCGCGu--CCucggGGCGGCGCGCAUc -3'
miRNA:   3'- ccUUGUGCuauGG----CCGCCGCGCGUAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.