miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24265 5' -55.8 NC_005263.2 + 28396 0.76 0.161326
Target:  5'- cGAcCACGAaGCCGGcCGGCGUGCAg- -3'
miRNA:   3'- cCUuGUGCUaUGGCC-GCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 27871 0.78 0.132741
Target:  5'- cGGAAUcagugGAUaagGCCGGCGGCGCGCAg- -3'
miRNA:   3'- -CCUUGug---CUA---UGGCCGCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 27696 0.69 0.454827
Target:  5'- --uGCGCGccggcGCCGGCGGC-CGCAUa -3'
miRNA:   3'- ccuUGUGCua---UGGCCGCCGcGCGUAa -5'
24265 5' -55.8 NC_005263.2 + 27377 0.67 0.570705
Target:  5'- -cGGCGCGGcGgCGGcCGGCGCGCu-- -3'
miRNA:   3'- ccUUGUGCUaUgGCC-GCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 26524 0.69 0.444901
Target:  5'- -cGGCGuCGAcGCCGGCGGCGaGCAc- -3'
miRNA:   3'- ccUUGU-GCUaUGGCCGCCGCgCGUaa -5'
24265 5' -55.8 NC_005263.2 + 26181 0.67 0.592717
Target:  5'- uGAGgACGGUcugcggccGCgCGGCGGCcGCGCGa- -3'
miRNA:   3'- cCUUgUGCUA--------UG-GCCGCCG-CGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 25694 0.77 0.144372
Target:  5'- cGGACACGGcgaGCaCGGCGGCGCGUAc- -3'
miRNA:   3'- cCUUGUGCUa--UG-GCCGCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 25019 0.66 0.648172
Target:  5'- cGGugGCGGUGgcugCGGUGGCGUGUAc- -3'
miRNA:   3'- cCUugUGCUAUg---GCCGCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 24974 0.72 0.320031
Target:  5'- cGGcAACACGAUGCUGGCcGGCcuggcCGCAa- -3'
miRNA:   3'- -CC-UUGUGCUAUGGCCG-CCGc----GCGUaa -5'
24265 5' -55.8 NC_005263.2 + 24939 0.7 0.39718
Target:  5'- cGGugGCGGcggaCGGCGGUGCGCGg- -3'
miRNA:   3'- cCUugUGCUaug-GCCGCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 24795 0.68 0.495669
Target:  5'- cGGcuCGcCGGgcgUCGGCGGCGCGUAUUc -3'
miRNA:   3'- -CCuuGU-GCUau-GGCCGCCGCGCGUAA- -5'
24265 5' -55.8 NC_005263.2 + 24685 0.78 0.118576
Target:  5'- gGGGGCGcCGGUAaCGGCGGCGCGCc-- -3'
miRNA:   3'- -CCUUGU-GCUAUgGCCGCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 24077 0.68 0.481176
Target:  5'- cGGACACGucgaccgauccgGCCGGCGGCG-GCu-- -3'
miRNA:   3'- cCUUGUGCua----------UGGCCGCCGCgCGuaa -5'
24265 5' -55.8 NC_005263.2 + 23789 0.66 0.659259
Target:  5'- cGGAAuUGCGAUgcccguGCCGGCGGC-CGUc-- -3'
miRNA:   3'- -CCUU-GUGCUA------UGGCCGCCGcGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 23181 0.66 0.63707
Target:  5'- cGGACugGAUAuCUGGgGGCGCa---- -3'
miRNA:   3'- cCUUGugCUAU-GGCCgCCGCGcguaa -5'
24265 5' -55.8 NC_005263.2 + 22464 0.66 0.611535
Target:  5'- gGGAGgcguuCACGAUugcuucuccuugucGCCGGCGGCG-GCc-- -3'
miRNA:   3'- -CCUU-----GUGCUA--------------UGGCCGCCGCgCGuaa -5'
24265 5' -55.8 NC_005263.2 + 22132 0.71 0.361452
Target:  5'- -aAGCGCGAUcGCCGGaCGGgGCGCu-- -3'
miRNA:   3'- ccUUGUGCUA-UGGCC-GCCgCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 21629 0.69 0.435099
Target:  5'- uGGAGCGCGGcGCCGGaaugGGCgaauuggguuGCGCAa- -3'
miRNA:   3'- -CCUUGUGCUaUGGCCg---CCG----------CGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 21185 0.67 0.592717
Target:  5'- cGGACGCGG-ACgCGcGCGGCGCGgGc- -3'
miRNA:   3'- cCUUGUGCUaUG-GC-CGCCGCGCgUaa -5'
24265 5' -55.8 NC_005263.2 + 20940 0.67 0.548898
Target:  5'- cGAAUGCGGUGaugaCGGCcGCGCGCu-- -3'
miRNA:   3'- cCUUGUGCUAUg---GCCGcCGCGCGuaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.