miRNA display CGI


Results 81 - 100 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24265 5' -55.8 NC_005263.2 + 11517 0.74 0.229332
Target:  5'- uGGucgcGCGCGAUGaaGGCGGCGCGguUc -3'
miRNA:   3'- -CCu---UGUGCUAUggCCGCCGCGCguAa -5'
24265 5' -55.8 NC_005263.2 + 10874 0.7 0.39718
Target:  5'- cGGAACuCGGcACCGGCG-CGCGUcgUg -3'
miRNA:   3'- -CCUUGuGCUaUGGCCGCcGCGCGuaA- -5'
24265 5' -55.8 NC_005263.2 + 10388 0.68 0.492546
Target:  5'- --cACGCGccggGCCGGCcggcgagcggguccGGCGCGCGUUc -3'
miRNA:   3'- ccuUGUGCua--UGGCCG--------------CCGCGCGUAA- -5'
24265 5' -55.8 NC_005263.2 + 10287 0.67 0.548898
Target:  5'- cGGcGACAUGAgcGCCGGauGCGCGCc-- -3'
miRNA:   3'- -CC-UUGUGCUa-UGGCCgcCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 10168 0.76 0.165836
Target:  5'- cGGuugcGCAcCGGcUGCCGGCGGCGCGCc-- -3'
miRNA:   3'- -CCu---UGU-GCU-AUGGCCGCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 9551 0.72 0.289532
Target:  5'- -cGACGCGGcgcucgcggcuUGCCaGGCGGCGCGCu-- -3'
miRNA:   3'- ccUUGUGCU-----------AUGG-CCGCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 9361 0.7 0.414927
Target:  5'- uGAAgGCGAgcGCCGGCGGCugcgggaauuucaGCGCGg- -3'
miRNA:   3'- cCUUgUGCUa-UGGCCGCCG-------------CGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 8872 0.7 0.414927
Target:  5'- gGGAuACGCGGcccgugcUGCCGGUGcagcGCGCGCAa- -3'
miRNA:   3'- -CCU-UGUGCU-------AUGGCCGC----CGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 7211 0.67 0.570705
Target:  5'- --cGCGCGAccaucGCCGGCgaccagaaGGCGCGCGc- -3'
miRNA:   3'- ccuUGUGCUa----UGGCCG--------CCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 6602 0.75 0.190122
Target:  5'- -cGACGCGAUcgcguUCGGCGGCGCGCu-- -3'
miRNA:   3'- ccUUGUGCUAu----GGCCGCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 6154 0.67 0.608209
Target:  5'- -aAACACGAgaauauucucgugcGCCuugaGCGGCGCGCGUUu -3'
miRNA:   3'- ccUUGUGCUa-------------UGGc---CGCCGCGCGUAA- -5'
24265 5' -55.8 NC_005263.2 + 6040 0.71 0.344446
Target:  5'- cGAGCACGccccguucGuuGGCGGCGCGCu-- -3'
miRNA:   3'- cCUUGUGCua------UggCCGCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 5268 0.67 0.592717
Target:  5'- ----gGCGGUGCCGGCaGCG-GCAUc -3'
miRNA:   3'- ccuugUGCUAUGGCCGcCGCgCGUAa -5'
24265 5' -55.8 NC_005263.2 + 5262 0.66 0.659259
Target:  5'- cGAACGUGAUGCgguaCGGgGGCGUGCu-- -3'
miRNA:   3'- cCUUGUGCUAUG----GCCgCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 4076 0.71 0.347801
Target:  5'- cGGAACGCGGcgaagucgccacccuUGCCGaGCGGaCGCGaCAg- -3'
miRNA:   3'- -CCUUGUGCU---------------AUGGC-CGCC-GCGC-GUaa -5'
24265 5' -55.8 NC_005263.2 + 3338 0.7 0.388037
Target:  5'- --uGCGCGccGCCGGCGccGCGCGCGg- -3'
miRNA:   3'- ccuUGUGCuaUGGCCGC--CGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 3285 0.68 0.50614
Target:  5'- aGGcAUACGcccuuucuccuuGUGCgcgCGGCGGCGCGCGg- -3'
miRNA:   3'- -CCuUGUGC------------UAUG---GCCGCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 3191 0.75 0.21175
Target:  5'- uGAGCACGAgGCCGGUgagccggcccGGCGCGCc-- -3'
miRNA:   3'- cCUUGUGCUaUGGCCG----------CCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 2333 0.77 0.140395
Target:  5'- cGGAACGCGAgcACCGuGCGGCcguuGCGCAg- -3'
miRNA:   3'- -CCUUGUGCUa-UGGC-CGCCG----CGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 1630 0.66 0.614863
Target:  5'- cGAACGCGucgUCGGCGGCGUaGCc-- -3'
miRNA:   3'- cCUUGUGCuauGGCCGCCGCG-CGuaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.