Results 1 - 20 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24265 | 5' | -55.8 | NC_005263.2 | + | 12472 | 1.08 | 0.000815 |
Target: 5'- cGGAACACGAUACCGGCGGCGCGCAUUg -3' miRNA: 3'- -CCUUGUGCUAUGGCCGCCGCGCGUAA- -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 39695 | 0.71 | 0.370171 |
Target: 5'- cGAACuucACGGUcGCCgaGGCGGCGCGCu-- -3' miRNA: 3'- cCUUG---UGCUA-UGG--CCGCCGCGCGuaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 12548 | 0.7 | 0.388037 |
Target: 5'- ---uCGCGGcgGCCGGCGGCGC-CGUa -3' miRNA: 3'- ccuuGUGCUa-UGGCCGCCGCGcGUAa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 23789 | 0.66 | 0.659259 |
Target: 5'- cGGAAuUGCGAUgcccguGCCGGCGGC-CGUc-- -3' miRNA: 3'- -CCUU-GUGCUA------UGGCCGCCGcGCGuaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 25694 | 0.77 | 0.144372 |
Target: 5'- cGGACACGGcgaGCaCGGCGGCGCGUAc- -3' miRNA: 3'- cCUUGUGCUa--UG-GCCGCCGCGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 28396 | 0.76 | 0.161326 |
Target: 5'- cGAcCACGAaGCCGGcCGGCGUGCAg- -3' miRNA: 3'- cCUuGUGCUaUGGCC-GCCGCGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 35759 | 0.76 | 0.179562 |
Target: 5'- cGGGCGCGGUuacugcgGCUGGCGGCGUGCc-- -3' miRNA: 3'- cCUUGUGCUA-------UGGCCGCCGCGCGuaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 6602 | 0.75 | 0.190122 |
Target: 5'- -cGACGCGAUcgcguUCGGCGGCGCGCu-- -3' miRNA: 3'- ccUUGUGCUAu----GGCCGCCGCGCGuaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 44118 | 0.73 | 0.268187 |
Target: 5'- aGGuGCGC--UGCuCGGCGGCGCGCGc- -3' miRNA: 3'- -CCuUGUGcuAUG-GCCGCCGCGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 46683 | 0.71 | 0.361452 |
Target: 5'- --cGCGCGcaGCCaaGGCGGCGCGCGc- -3' miRNA: 3'- ccuUGUGCuaUGG--CCGCCGCGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 29214 | 0.72 | 0.296937 |
Target: 5'- aGGccGGCGCGuauuUGCCGuCGGCGCGCAg- -3' miRNA: 3'- -CC--UUGUGCu---AUGGCcGCCGCGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 11517 | 0.74 | 0.229332 |
Target: 5'- uGGucgcGCGCGAUGaaGGCGGCGCGguUc -3' miRNA: 3'- -CCu---UGUGCUAUggCCGCCGCGCguAa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 44772 | 0.85 | 0.039281 |
Target: 5'- --cGCGCGGcGCCGGCGGCGCGCAg- -3' miRNA: 3'- ccuUGUGCUaUGGCCGCCGCGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 4076 | 0.71 | 0.347801 |
Target: 5'- cGGAACGCGGcgaagucgccacccuUGCCGaGCGGaCGCGaCAg- -3' miRNA: 3'- -CCUUGUGCU---------------AUGGC-CGCC-GCGC-GUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 44057 | 0.78 | 0.125473 |
Target: 5'- uGGAACACGGUGCugCGGCGGCaGCGgGg- -3' miRNA: 3'- -CCUUGUGCUAUG--GCCGCCG-CGCgUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 3191 | 0.75 | 0.21175 |
Target: 5'- uGAGCACGAgGCCGGUgagccggcccGGCGCGCc-- -3' miRNA: 3'- cCUUGUGCUaUGGCCG----------CCGCGCGuaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 39345 | 0.71 | 0.361452 |
Target: 5'- cGGGGCugGcaGCCgauucgcucggcGGCGGCGCGCu-- -3' miRNA: 3'- -CCUUGugCuaUGG------------CCGCCGCGCGuaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 1558 | 0.7 | 0.388037 |
Target: 5'- uGAACACGAaGCCGGCcgacaGCGUGCcgUc -3' miRNA: 3'- cCUUGUGCUaUGGCCGc----CGCGCGuaA- -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 2333 | 0.77 | 0.140395 |
Target: 5'- cGGAACGCGAgcACCGuGCGGCcguuGCGCAg- -3' miRNA: 3'- -CCUUGUGCUa-UGGC-CGCCG----CGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 10168 | 0.76 | 0.165836 |
Target: 5'- cGGuugcGCAcCGGcUGCCGGCGGCGCGCc-- -3' miRNA: 3'- -CCu---UGU-GCU-AUGGCCGCCGCGCGuaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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