Results 21 - 40 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24265 | 5' | -55.8 | NC_005263.2 | + | 31615 | 0.7 | 0.415875 |
Target: 5'- cGGu-CGCGAcgGCCGcGCGGCGCaGCGc- -3' miRNA: 3'- -CCuuGUGCUa-UGGC-CGCCGCG-CGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 12548 | 0.7 | 0.388037 |
Target: 5'- ---uCGCGGcgGCCGGCGGCGC-CGUa -3' miRNA: 3'- ccuuGUGCUa-UGGCCGCCGCGcGUAa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 11517 | 0.74 | 0.229332 |
Target: 5'- uGGucgcGCGCGAUGaaGGCGGCGCGguUc -3' miRNA: 3'- -CCu---UGUGCUAUggCCGCCGCGCguAa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 2333 | 0.77 | 0.140395 |
Target: 5'- cGGAACGCGAgcACCGuGCGGCcguuGCGCAg- -3' miRNA: 3'- -CCUUGUGCUa-UGGC-CGCCG----CGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 31552 | 0.67 | 0.570705 |
Target: 5'- -uGGCGuCGcUGCCcaGGCGGCGCGCcgUg -3' miRNA: 3'- ccUUGU-GCuAUGG--CCGCCGCGCGuaA- -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 3285 | 0.68 | 0.50614 |
Target: 5'- aGGcAUACGcccuuucuccuuGUGCgcgCGGCGGCGCGCGg- -3' miRNA: 3'- -CCuUGUGC------------UAUG---GCCGCCGCGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 39695 | 0.71 | 0.370171 |
Target: 5'- cGAACuucACGGUcGCCgaGGCGGCGCGCu-- -3' miRNA: 3'- cCUUG---UGCUA-UGG--CCGCCGCGCGuaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 44057 | 0.78 | 0.125473 |
Target: 5'- uGGAACACGGUGCugCGGCGGCaGCGgGg- -3' miRNA: 3'- -CCUUGUGCUAUG--GCCGCCG-CGCgUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 46426 | 0.68 | 0.50614 |
Target: 5'- -cAAUAcCGA-ACUGGCGGCGCGCu-- -3' miRNA: 3'- ccUUGU-GCUaUGGCCGCCGCGCGuaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 44772 | 0.85 | 0.039281 |
Target: 5'- --cGCGCGGcGCCGGCGGCGCGCAg- -3' miRNA: 3'- ccuUGUGCUaUGGCCGCCGCGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 1558 | 0.7 | 0.388037 |
Target: 5'- uGAACACGAaGCCGGCcgacaGCGUGCcgUc -3' miRNA: 3'- cCUUGUGCUaUGGCCGc----CGCGCGuaA- -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 21629 | 0.69 | 0.435099 |
Target: 5'- uGGAGCGCGGcGCCGGaaugGGCgaauuggguuGCGCAa- -3' miRNA: 3'- -CCUUGUGCUaUGGCCg---CCG----------CGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 4076 | 0.71 | 0.347801 |
Target: 5'- cGGAACGCGGcgaagucgccacccuUGCCGaGCGGaCGCGaCAg- -3' miRNA: 3'- -CCUUGUGCU---------------AUGGC-CGCC-GCGC-GUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 44118 | 0.73 | 0.268187 |
Target: 5'- aGGuGCGC--UGCuCGGCGGCGCGCGc- -3' miRNA: 3'- -CCuUGUGcuAUG-GCCGCCGCGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 35759 | 0.76 | 0.179562 |
Target: 5'- cGGGCGCGGUuacugcgGCUGGCGGCGUGCc-- -3' miRNA: 3'- cCUUGUGCUA-------UGGCCGCCGCGCGuaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 25694 | 0.77 | 0.144372 |
Target: 5'- cGGACACGGcgaGCaCGGCGGCGCGUAc- -3' miRNA: 3'- cCUUGUGCUa--UG-GCCGCCGCGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 21185 | 0.67 | 0.592717 |
Target: 5'- cGGACGCGG-ACgCGcGCGGCGCGgGc- -3' miRNA: 3'- cCUUGUGCUaUG-GC-CGCCGCGCgUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 578 | 0.67 | 0.570705 |
Target: 5'- uGGAAUGCGAgAUCGGCaauGGCGC-CAUc -3' miRNA: 3'- -CCUUGUGCUaUGGCCG---CCGCGcGUAa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 10287 | 0.67 | 0.548898 |
Target: 5'- cGGcGACAUGAgcGCCGGauGCGCGCc-- -3' miRNA: 3'- -CC-UUGUGCUa-UGGCCgcCGCGCGuaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 20895 | 0.68 | 0.50614 |
Target: 5'- aGGAggcGCACGGgaugacGCCGGaUGGCGUGUAc- -3' miRNA: 3'- -CCU---UGUGCUa-----UGGCC-GCCGCGCGUaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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