miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24265 5' -55.8 NC_005263.2 + 15466 0.66 0.614863
Target:  5'- uGAGCgACGAUuuGCCGugcuGCGGCgGCGCGg- -3'
miRNA:   3'- cCUUG-UGCUA--UGGC----CGCCG-CGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 13392 0.67 0.581689
Target:  5'- cGGGACACGAUcguguGCaGGCG-CGuCGCAUg -3'
miRNA:   3'- -CCUUGUGCUA-----UGgCCGCcGC-GCGUAa -5'
24265 5' -55.8 NC_005263.2 + 1336 0.67 0.556504
Target:  5'- cGAACACGAucacggccggUugcagaaucuuuuuGCCGGCGGCggccuugaacgaGCGCAUg -3'
miRNA:   3'- cCUUGUGCU----------A--------------UGGCCGCCG------------CGCGUAa -5'
24265 5' -55.8 NC_005263.2 + 31335 0.68 0.538091
Target:  5'- ----gGCGAUacGCCGGCGGCcgucagGCGCGa- -3'
miRNA:   3'- ccuugUGCUA--UGGCCGCCG------CGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 28396 0.76 0.161326
Target:  5'- cGAcCACGAaGCCGGcCGGCGUGCAg- -3'
miRNA:   3'- cCUuGUGCUaUGGCC-GCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 25694 0.77 0.144372
Target:  5'- cGGACACGGcgaGCaCGGCGGCGCGUAc- -3'
miRNA:   3'- cCUUGUGCUa--UG-GCCGCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 46426 0.68 0.50614
Target:  5'- -cAAUAcCGA-ACUGGCGGCGCGCu-- -3'
miRNA:   3'- ccUUGU-GCUaUGGCCGCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 21629 0.69 0.435099
Target:  5'- uGGAGCGCGGcGCCGGaaugGGCgaauuggguuGCGCAa- -3'
miRNA:   3'- -CCUUGUGCUaUGGCCg---CCG----------CGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 30145 0.66 0.658151
Target:  5'- uGGcGCugGAUGCCGuucacgaGCuGGCGCGgGUc -3'
miRNA:   3'- -CCuUGugCUAUGGC-------CG-CCGCGCgUAa -5'
24265 5' -55.8 NC_005263.2 + 24685 0.78 0.118576
Target:  5'- gGGGGCGcCGGUAaCGGCGGCGCGCc-- -3'
miRNA:   3'- -CCUUGU-GCUAUgGCCGCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 17887 0.75 0.21175
Target:  5'- cGAACGaucaGucgACCGGCGGCGCGCc-- -3'
miRNA:   3'- cCUUGUg---Cua-UGGCCGCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 27871 0.78 0.132741
Target:  5'- cGGAAUcagugGAUaagGCCGGCGGCGCGCAg- -3'
miRNA:   3'- -CCUUGug---CUA---UGGCCGCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 24795 0.68 0.495669
Target:  5'- cGGcuCGcCGGgcgUCGGCGGCGCGUAUUc -3'
miRNA:   3'- -CCuuGU-GCUau-GGCCGCCGCGCGUAA- -5'
24265 5' -55.8 NC_005263.2 + 23181 0.66 0.63707
Target:  5'- cGGACugGAUAuCUGGgGGCGCa---- -3'
miRNA:   3'- cCUUGugCUAU-GGCCgCCGCGcguaa -5'
24265 5' -55.8 NC_005263.2 + 45474 0.67 0.592717
Target:  5'- cGGcaAGCGCGAUgaACCGcGCGGUcggccugucGCGCAa- -3'
miRNA:   3'- -CC--UUGUGCUA--UGGC-CGCCG---------CGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 5268 0.67 0.592717
Target:  5'- ----gGCGGUGCCGGCaGCG-GCAUc -3'
miRNA:   3'- ccuugUGCUAUGGCCGcCGCgCGUAa -5'
24265 5' -55.8 NC_005263.2 + 24077 0.68 0.481176
Target:  5'- cGGACACGucgaccgauccgGCCGGCGGCG-GCu-- -3'
miRNA:   3'- cCUUGUGCua----------UGGCCGCCGCgCGuaa -5'
24265 5' -55.8 NC_005263.2 + 1236 0.68 0.485296
Target:  5'- cGAGCGCGAUGucauCCGGCcaGGaUGCGCGa- -3'
miRNA:   3'- cCUUGUGCUAU----GGCCG--CC-GCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 10388 0.68 0.492546
Target:  5'- --cACGCGccggGCCGGCcggcgagcggguccGGCGCGCGUUc -3'
miRNA:   3'- ccuUGUGCua--UGGCCG--------------CCGCGCGUAA- -5'
24265 5' -55.8 NC_005263.2 + 43782 0.68 0.495669
Target:  5'- --uGCACGAUAUCGugcGCGGCGCGa--- -3'
miRNA:   3'- ccuUGUGCUAUGGC---CGCCGCGCguaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.