Results 81 - 100 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24265 | 5' | -55.8 | NC_005263.2 | + | 6040 | 0.71 | 0.344446 |
Target: 5'- cGAGCACGccccguucGuuGGCGGCGCGCu-- -3' miRNA: 3'- cCUUGUGCua------UggCCGCCGCGCGuaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 19372 | 0.72 | 0.328023 |
Target: 5'- cGGAUGCGcauUGCCgucagccucGGCGGCGCGCAg- -3' miRNA: 3'- cCUUGUGCu--AUGG---------CCGCCGCGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 14254 | 0.72 | 0.328023 |
Target: 5'- cGGGCugGcUugCGGCGGCcgGCGCAa- -3' miRNA: 3'- cCUUGugCuAugGCCGCCG--CGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 24974 | 0.72 | 0.320031 |
Target: 5'- cGGcAACACGAUGCUGGCcGGCcuggcCGCAa- -3' miRNA: 3'- -CC-UUGUGCUAUGGCCG-CCGc----GCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 48006 | 0.73 | 0.282272 |
Target: 5'- -cGACACGAcUACCGGCaccGGCGgGCAg- -3' miRNA: 3'- ccUUGUGCU-AUGGCCG---CCGCgCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 35522 | 0.73 | 0.268187 |
Target: 5'- uGGcGCGcCGAcugcgcCCGGCGGCGCGCGg- -3' miRNA: 3'- -CCuUGU-GCUau----GGCCGCCGCGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 45348 | 0.73 | 0.26136 |
Target: 5'- cGAACACGAccgGCaCGGCGGC-CGCGa- -3' miRNA: 3'- cCUUGUGCUa--UG-GCCGCCGcGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 17737 | 0.74 | 0.229332 |
Target: 5'- uGGGGCucgcacuCGGcGCCGGCGGCaGCGCGg- -3' miRNA: 3'- -CCUUGu------GCUaUGGCCGCCG-CGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 22132 | 0.71 | 0.361452 |
Target: 5'- -aAGCGCGAUcGCCGGaCGGgGCGCu-- -3' miRNA: 3'- ccUUGUGCUA-UGGCC-GCCgCGCGuaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 46158 | 0.7 | 0.379034 |
Target: 5'- -cGACGCGGuUGCCGGCgucgccggugccGGCGCGCu-- -3' miRNA: 3'- ccUUGUGCU-AUGGCCG------------CCGCGCGuaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 3338 | 0.7 | 0.388037 |
Target: 5'- --uGCGCGccGCCGGCGccGCGCGCGg- -3' miRNA: 3'- ccuUGUGCuaUGGCCGC--CGCGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 34035 | 0.69 | 0.475028 |
Target: 5'- -cGACAUGG-GCCGGCgcGGCGCGCu-- -3' miRNA: 3'- ccUUGUGCUaUGGCCG--CCGCGCGuaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 27696 | 0.69 | 0.454827 |
Target: 5'- --uGCGCGccggcGCCGGCGGC-CGCAUa -3' miRNA: 3'- ccuUGUGCua---UGGCCGCCGcGCGUAa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 46833 | 0.7 | 0.425422 |
Target: 5'- -cAACGCGc-GCCaGGCGGCGCGCc-- -3' miRNA: 3'- ccUUGUGCuaUGG-CCGCCGCGCGuaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 37925 | 0.7 | 0.415875 |
Target: 5'- cGGGcgcagGCGCGccGCCGGCagccGGUGCGCAa- -3' miRNA: 3'- -CCU-----UGUGCuaUGGCCG----CCGCGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 20855 | 0.7 | 0.415875 |
Target: 5'- cGGAGaccuaACGcuaucgGCCGGCGGCGCGa--- -3' miRNA: 3'- -CCUUg----UGCua----UGGCCGCCGCGCguaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 9361 | 0.7 | 0.414927 |
Target: 5'- uGAAgGCGAgcGCCGGCGGCugcgggaauuucaGCGCGg- -3' miRNA: 3'- cCUUgUGCUa-UGGCCGCCG-------------CGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 8872 | 0.7 | 0.414927 |
Target: 5'- gGGAuACGCGGcccgugcUGCCGGUGcagcGCGCGCAa- -3' miRNA: 3'- -CCU-UGUGCU-------AUGGCCGC----CGCGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 24939 | 0.7 | 0.39718 |
Target: 5'- cGGugGCGGcggaCGGCGGUGCGCGg- -3' miRNA: 3'- cCUugUGCUaug-GCCGCCGCGCGUaa -5' |
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24265 | 5' | -55.8 | NC_005263.2 | + | 13354 | 0.7 | 0.39718 |
Target: 5'- --uACACaGAUGCgGGCGGCGCGa--- -3' miRNA: 3'- ccuUGUG-CUAUGgCCGCCGCGCguaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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