miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24265 5' -55.8 NC_005263.2 + 32855 0.67 0.564139
Target:  5'- aGGACACGucaaacgaguucgauGUGCCGGCGgGCG-GCGa- -3'
miRNA:   3'- cCUUGUGC---------------UAUGGCCGC-CGCgCGUaa -5'
24265 5' -55.8 NC_005263.2 + 26181 0.67 0.592717
Target:  5'- uGAGgACGGUcugcggccGCgCGGCGGCcGCGCGa- -3'
miRNA:   3'- cCUUgUGCUA--------UG-GCCGCCG-CGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 45474 0.67 0.592717
Target:  5'- cGGcaAGCGCGAUgaACCGcGCGGUcggccugucGCGCAa- -3'
miRNA:   3'- -CC--UUGUGCUA--UGGC-CGCCG---------CGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 5268 0.67 0.592717
Target:  5'- ----gGCGGUGCCGGCaGCG-GCAUc -3'
miRNA:   3'- ccuugUGCUAUGGCCGcCGCgCGUAa -5'
24265 5' -55.8 NC_005263.2 + 27377 0.67 0.570705
Target:  5'- -cGGCGCGGcGgCGGcCGGCGCGCu-- -3'
miRNA:   3'- ccUUGUGCUaUgGCC-GCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 853 0.67 0.575094
Target:  5'- cGAGCGCGGacagcguacccgucgUGCCGGcCGGCGCuuCGUUc -3'
miRNA:   3'- cCUUGUGCU---------------AUGGCC-GCCGCGc-GUAA- -5'
24265 5' -55.8 NC_005263.2 + 38124 0.67 0.570705
Target:  5'- -aGACgGCGA-ACCGGaCGGCGUGCGc- -3'
miRNA:   3'- ccUUG-UGCUaUGGCC-GCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 36071 0.67 0.570705
Target:  5'- cGGAA-GCGAugUACCGGCGcaagcuugaGCGCGCcgUc -3'
miRNA:   3'- -CCUUgUGCU--AUGGCCGC---------CGCGCGuaA- -5'
24265 5' -55.8 NC_005263.2 + 7211 0.67 0.570705
Target:  5'- --cGCGCGAccaucGCCGGCgaccagaaGGCGCGCGc- -3'
miRNA:   3'- ccuUGUGCUa----UGGCCG--------CCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 39005 0.67 0.592717
Target:  5'- cGGcAACACGAUccaGCCGGguaugcCGGuCGCGCu-- -3'
miRNA:   3'- -CC-UUGUGCUA---UGGCC------GCC-GCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 40260 0.66 0.614863
Target:  5'- uGGGGCGCGGUGaucuuccgcCCGuucGCGGuUGCGCAg- -3'
miRNA:   3'- -CCUUGUGCUAU---------GGC---CGCC-GCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 13746 0.66 0.63596
Target:  5'- cGGGGCAC--UGCCGGUuuacacggcgacaGGCGCGUc-- -3'
miRNA:   3'- -CCUUGUGcuAUGGCCG-------------CCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 1422 0.66 0.659259
Target:  5'- cGGcGCGCGccGCCuuGGCuGCGCGCGa- -3'
miRNA:   3'- -CCuUGUGCuaUGG--CCGcCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 20336 0.66 0.659259
Target:  5'- -aAGCAUGGccUGCCgccgcaccucGGgGGCGCGCAUg -3'
miRNA:   3'- ccUUGUGCU--AUGG----------CCgCCGCGCGUAa -5'
24265 5' -55.8 NC_005263.2 + 32306 0.66 0.648172
Target:  5'- -cGACACGGUGUCGGaCGagcaGCGCGCAg- -3'
miRNA:   3'- ccUUGUGCUAUGGCC-GC----CGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 25019 0.66 0.648172
Target:  5'- cGGugGCGGUGgcugCGGUGGCGUGUAc- -3'
miRNA:   3'- cCUugUGCUAUg---GCCGCCGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 35458 0.66 0.648172
Target:  5'- cGGccGACgACGAUAUCGaCGGCGUGCu-- -3'
miRNA:   3'- -CC--UUG-UGCUAUGGCcGCCGCGCGuaa -5'
24265 5' -55.8 NC_005263.2 + 23181 0.66 0.63707
Target:  5'- cGGACugGAUAuCUGGgGGCGCa---- -3'
miRNA:   3'- cCUUGugCUAU-GGCCgCCGCGcguaa -5'
24265 5' -55.8 NC_005263.2 + 19058 0.66 0.63707
Target:  5'- aGGACGCGccGCgCGGCcuGCGCGCGc- -3'
miRNA:   3'- cCUUGUGCuaUG-GCCGc-CGCGCGUaa -5'
24265 5' -55.8 NC_005263.2 + 17579 0.66 0.63707
Target:  5'- -cAACACGAacgGCggCGGCcaaGGCGCGCAg- -3'
miRNA:   3'- ccUUGUGCUa--UG--GCCG---CCGCGCGUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.