Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24267 | 3' | -55.3 | NC_005263.2 | + | 13646 | 1.13 | 0.000476 |
Target: 5'- aUCAUGGAUGACGGUCGUGCGCACCGCg -3' miRNA: 3'- -AGUACCUACUGCCAGCACGCGUGGCG- -5' |
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24267 | 3' | -55.3 | NC_005263.2 | + | 38346 | 0.79 | 0.118582 |
Target: 5'- -gAUGGAUG-CGaaGUCgGUGCGCACCGCg -3' miRNA: 3'- agUACCUACuGC--CAG-CACGCGUGGCG- -5' |
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24267 | 3' | -55.3 | NC_005263.2 | + | 7032 | 0.73 | 0.295337 |
Target: 5'- aCGUGuc-GACGaUCGUGCGCGCCGUc -3' miRNA: 3'- aGUACcuaCUGCcAGCACGCGUGGCG- -5' |
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24267 | 3' | -55.3 | NC_005263.2 | + | 18280 | 0.72 | 0.334144 |
Target: 5'- ---cGGgcGAUGcgcucGUCGUGCGCGCUGCa -3' miRNA: 3'- aguaCCuaCUGC-----CAGCACGCGUGGCG- -5' |
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24267 | 3' | -55.3 | NC_005263.2 | + | 26175 | 0.72 | 0.334144 |
Target: 5'- -gGUGGAUgagGACGGUC-UGCG-GCCGCg -3' miRNA: 3'- agUACCUA---CUGCCAGcACGCgUGGCG- -5' |
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24267 | 3' | -55.3 | NC_005263.2 | + | 29690 | 0.72 | 0.34234 |
Target: 5'- -aGUGGA--ACGGcgucaggaUCGUGCGCACcCGCg -3' miRNA: 3'- agUACCUacUGCC--------AGCACGCGUG-GCG- -5' |
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24267 | 3' | -55.3 | NC_005263.2 | + | 14433 | 0.72 | 0.34234 |
Target: 5'- cCAUGc--GACGG-CGUGCGCGCgCGCc -3' miRNA: 3'- aGUACcuaCUGCCaGCACGCGUG-GCG- -5' |
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24267 | 3' | -55.3 | NC_005263.2 | + | 16759 | 0.71 | 0.403689 |
Target: 5'- uUUAUGGAgucgcgccUGACGGcCGccgGCGUAUCGCc -3' miRNA: 3'- -AGUACCU--------ACUGCCaGCa--CGCGUGGCG- -5' |
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24267 | 3' | -55.3 | NC_005263.2 | + | 20047 | 0.7 | 0.432026 |
Target: 5'- -aAUGGAUcgcGGCGGUCGUucaGCACaCGCu -3' miRNA: 3'- agUACCUA---CUGCCAGCAcg-CGUG-GCG- -5' |
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24267 | 3' | -55.3 | NC_005263.2 | + | 40856 | 0.7 | 0.441727 |
Target: 5'- aCAUcGuUGACGGUCGagagccucgcGUGCACCGCa -3' miRNA: 3'- aGUAcCuACUGCCAGCa---------CGCGUGGCG- -5' |
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24267 | 3' | -55.3 | NC_005263.2 | + | 19034 | 0.69 | 0.491982 |
Target: 5'- -------cGACGGcCGaUGCGCGCCGCc -3' miRNA: 3'- aguaccuaCUGCCaGC-ACGCGUGGCG- -5' |
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24267 | 3' | -55.3 | NC_005263.2 | + | 19802 | 0.69 | 0.491982 |
Target: 5'- -gAUGGGUGcCGGUCGcacgGCcgGUACUGCa -3' miRNA: 3'- agUACCUACuGCCAGCa---CG--CGUGGCG- -5' |
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24267 | 3' | -55.3 | NC_005263.2 | + | 22361 | 0.69 | 0.512817 |
Target: 5'- aUCAcgcgGGcgGACaGGUCGUGCaCGgCGCg -3' miRNA: 3'- -AGUa---CCuaCUG-CCAGCACGcGUgGCG- -5' |
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24267 | 3' | -55.3 | NC_005263.2 | + | 38127 | 0.69 | 0.512817 |
Target: 5'- ---cGGcgaaccgGACGG-CGUGCGCAgcCCGCa -3' miRNA: 3'- aguaCCua-----CUGCCaGCACGCGU--GGCG- -5' |
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24267 | 3' | -55.3 | NC_005263.2 | + | 29914 | 0.68 | 0.555497 |
Target: 5'- gCGUGcccGAauGCGGaCGUaGCGCGCCGCa -3' miRNA: 3'- aGUAC---CUacUGCCaGCA-CGCGUGGCG- -5' |
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24267 | 3' | -55.3 | NC_005263.2 | + | 41168 | 0.68 | 0.555497 |
Target: 5'- gCGUGGgcGGCcGUCGUcgauacguuGCGCGCUGUg -3' miRNA: 3'- aGUACCuaCUGcCAGCA---------CGCGUGGCG- -5' |
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24267 | 3' | -55.3 | NC_005263.2 | + | 7702 | 0.67 | 0.621182 |
Target: 5'- ---cGGccGcGCGG-CGUGUGCACCGUu -3' miRNA: 3'- aguaCCuaC-UGCCaGCACGCGUGGCG- -5' |
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24267 | 3' | -55.3 | NC_005263.2 | + | 22905 | 0.67 | 0.621182 |
Target: 5'- uUCGUGccgGACGGagGUGCccaaGCugCGCg -3' miRNA: 3'- -AGUACcuaCUGCCagCACG----CGugGCG- -5' |
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24267 | 3' | -55.3 | NC_005263.2 | + | 6615 | 0.66 | 0.665279 |
Target: 5'- cCGUGGAUcacGACGGcCGacuCGC-CCGCg -3' miRNA: 3'- aGUACCUA---CUGCCaGCac-GCGuGGCG- -5' |
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24267 | 3' | -55.3 | NC_005263.2 | + | 29295 | 0.66 | 0.665279 |
Target: 5'- gCAcGGcgGcCgGGUCGgcaUGCGCAUCGCg -3' miRNA: 3'- aGUaCCuaCuG-CCAGC---ACGCGUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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