miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24267 5' -50.9 NC_005263.2 + 36216 0.66 0.916467
Target:  5'- cGCGCAGGCGccCGG-CgccgCGUCGUc-- -3'
miRNA:   3'- -CGCGUCCGCaaGCUaGa---GCAGUAacu -5'
24267 5' -50.9 NC_005263.2 + 21202 0.66 0.916467
Target:  5'- gGCGCGGGCGagugggugcguUUCGAgcgCGUCGc--- -3'
miRNA:   3'- -CGCGUCCGC-----------AAGCUagaGCAGUaacu -5'
24267 5' -50.9 NC_005263.2 + 45359 0.66 0.916467
Target:  5'- -gGCAcGGCGgccgCGAUCUCGgcugUGAc -3'
miRNA:   3'- cgCGU-CCGCaa--GCUAGAGCaguaACU- -5'
24267 5' -50.9 NC_005263.2 + 21836 0.66 0.90304
Target:  5'- uCGCGGGCGUUCaggcuGAUCagGUCGc--- -3'
miRNA:   3'- cGCGUCCGCAAG-----CUAGagCAGUaacu -5'
24267 5' -50.9 NC_005263.2 + 2271 0.67 0.872755
Target:  5'- aGCGCAGcGCGUUCGccGUCggcagGUCGUg-- -3'
miRNA:   3'- -CGCGUC-CGCAAGC--UAGag---CAGUAacu -5'
24267 5' -50.9 NC_005263.2 + 6766 0.67 0.847221
Target:  5'- cGCGcCGGGCGagcUCGGcCUCGUCGa--- -3'
miRNA:   3'- -CGC-GUCCGCa--AGCUaGAGCAGUaacu -5'
24267 5' -50.9 NC_005263.2 + 140 0.67 0.847221
Target:  5'- aUGCGGGCa--CGAUUUCGUCGUg-- -3'
miRNA:   3'- cGCGUCCGcaaGCUAGAGCAGUAacu -5'
24267 5' -50.9 NC_005263.2 + 6187 0.68 0.809844
Target:  5'- cGCGCAGGuCGaaUUCGGgcugCUCGggcgaGUUGAu -3'
miRNA:   3'- -CGCGUCC-GC--AAGCUa---GAGCag---UAACU- -5'
24267 5' -50.9 NC_005263.2 + 28095 0.69 0.758731
Target:  5'- uGUGUuGGCGcggcCGAUCgCGUCGUUGAc -3'
miRNA:   3'- -CGCGuCCGCaa--GCUAGaGCAGUAACU- -5'
24267 5' -50.9 NC_005263.2 + 46069 0.69 0.748042
Target:  5'- cGCGCGGGCGUcgacgUGAUCgaugCGgCcgUGAc -3'
miRNA:   3'- -CGCGUCCGCAa----GCUAGa---GCaGuaACU- -5'
24267 5' -50.9 NC_005263.2 + 47441 0.71 0.635164
Target:  5'- cGCGCuacgaugAGGCGUUCGAUCUggccggcaCGUCGc--- -3'
miRNA:   3'- -CGCG-------UCCGCAAGCUAGA--------GCAGUaacu -5'
24267 5' -50.9 NC_005263.2 + 18268 0.73 0.523893
Target:  5'- uCGCAGGCGUUCcGGgcgaugcgCUCGUCGUg-- -3'
miRNA:   3'- cGCGUCCGCAAG-CUa-------GAGCAGUAacu -5'
24267 5' -50.9 NC_005263.2 + 11857 0.74 0.502197
Target:  5'- cGCGCAGGCGcUUC-AUUUCGUCGa--- -3'
miRNA:   3'- -CGCGUCCGC-AAGcUAGAGCAGUaacu -5'
24267 5' -50.9 NC_005263.2 + 13681 1.11 0.00177
Target:  5'- uGCGCAGGCGUUCGAUCUCGUCAUUGAu -3'
miRNA:   3'- -CGCGUCCGCAAGCUAGAGCAGUAACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.