miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24269 3' -58.2 NC_005263.2 + 15402 0.66 0.53887
Target:  5'- --cGCCGUGCauGCGCUCGUgaccgaccugcugaCGCaCGUCg -3'
miRNA:   3'- aguCGGUAUG--CGCGAGCAg-------------GCG-GCAG- -5'
24269 3' -58.2 NC_005263.2 + 11230 0.66 0.533589
Target:  5'- --cGCCAaGCGCGCccgggucgaauucUCGaCCGCCGg- -3'
miRNA:   3'- aguCGGUaUGCGCG-------------AGCaGGCGGCag -5'
24269 3' -58.2 NC_005263.2 + 4707 0.66 0.524129
Target:  5'- aUCuGUCGU-CGUGCUUcuugGUCCGCCG-Cg -3'
miRNA:   3'- -AGuCGGUAuGCGCGAG----CAGGCGGCaG- -5'
24269 3' -58.2 NC_005263.2 + 20581 0.66 0.523082
Target:  5'- cCGGCCGUgccgACGgGCaccgcgaccggcuUCGUgaaCGCCGUCg -3'
miRNA:   3'- aGUCGGUA----UGCgCG-------------AGCAg--GCGGCAG- -5'
24269 3' -58.2 NC_005263.2 + 13723 0.66 0.513695
Target:  5'- --cGCCGUccgACGUGCUCGcggcguuaCCGCCGg- -3'
miRNA:   3'- aguCGGUA---UGCGCGAGCa-------GGCGGCag -5'
24269 3' -58.2 NC_005263.2 + 41606 0.66 0.513695
Target:  5'- cCGGCUucaACGCGC-CGUUCGUCGa- -3'
miRNA:   3'- aGUCGGua-UGCGCGaGCAGGCGGCag -5'
24269 3' -58.2 NC_005263.2 + 25633 0.66 0.513695
Target:  5'- gUCGcGCCGUAguugauCGCGCugUCG-CUGCCGUUg -3'
miRNA:   3'- -AGU-CGGUAU------GCGCG--AGCaGGCGGCAG- -5'
24269 3' -58.2 NC_005263.2 + 26013 0.66 0.513695
Target:  5'- gCAGCCGUcACGC-CUgGUgUGCCGgUCa -3'
miRNA:   3'- aGUCGGUA-UGCGcGAgCAgGCGGC-AG- -5'
24269 3' -58.2 NC_005263.2 + 37015 0.66 0.513695
Target:  5'- aCAGCUgcuUACGCGCggCGUCaucccacgcuuuUGCCGUg -3'
miRNA:   3'- aGUCGGu--AUGCGCGa-GCAG------------GCGGCAg -5'
24269 3' -58.2 NC_005263.2 + 5324 0.66 0.503346
Target:  5'- uUCGcGCCuu-CGCGCuggaUCGUCaCGCCGcCg -3'
miRNA:   3'- -AGU-CGGuauGCGCG----AGCAG-GCGGCaG- -5'
24269 3' -58.2 NC_005263.2 + 3657 0.66 0.503346
Target:  5'- gUAGCCGgugUGCaGCUCGUUCgagacagugccgGCCGUCg -3'
miRNA:   3'- aGUCGGUau-GCG-CGAGCAGG------------CGGCAG- -5'
24269 3' -58.2 NC_005263.2 + 44365 0.66 0.503346
Target:  5'- aCGGCaCGUACGCGCUgaUCCGgcCCGg- -3'
miRNA:   3'- aGUCG-GUAUGCGCGAgcAGGC--GGCag -5'
24269 3' -58.2 NC_005263.2 + 34783 0.66 0.503346
Target:  5'- aUCAGCaugACGCaGCUCGcgaUGCCGUa -3'
miRNA:   3'- -AGUCGguaUGCG-CGAGCag-GCGGCAg -5'
24269 3' -58.2 NC_005263.2 + 12008 0.66 0.503346
Target:  5'- gCGGCCAUcaacgcgacgGCGCGCUCaagcuUgCGCCGg- -3'
miRNA:   3'- aGUCGGUA----------UGCGCGAGc----AgGCGGCag -5'
24269 3' -58.2 NC_005263.2 + 4842 0.66 0.502316
Target:  5'- gUCGGuugcCCGUACGCGCgcgcCGUgccgaugccgcugCCGCCGcUCa -3'
miRNA:   3'- -AGUC----GGUAUGCGCGa---GCA-------------GGCGGC-AG- -5'
24269 3' -58.2 NC_005263.2 + 36809 0.66 0.493089
Target:  5'- -aGGCCAUAaauugcCGCuGCUCGUCgCGCaCGaUCa -3'
miRNA:   3'- agUCGGUAU------GCG-CGAGCAG-GCG-GC-AG- -5'
24269 3' -58.2 NC_005263.2 + 24191 0.66 0.493089
Target:  5'- aUCAGCCAccaagcgaUGCGCGCgaccUGguucagCgCGCCGUUg -3'
miRNA:   3'- -AGUCGGU--------AUGCGCGa---GCa-----G-GCGGCAG- -5'
24269 3' -58.2 NC_005263.2 + 22020 0.66 0.493089
Target:  5'- gCAGCUcgACGCGCUCuaugcgcacGUgCGCCa-- -3'
miRNA:   3'- aGUCGGuaUGCGCGAG---------CAgGCGGcag -5'
24269 3' -58.2 NC_005263.2 + 14092 0.66 0.493089
Target:  5'- gUCGGCUGguaccgGCuGCGCggCGgUCGCCGUCg -3'
miRNA:   3'- -AGUCGGUa-----UG-CGCGa-GCaGGCGGCAG- -5'
24269 3' -58.2 NC_005263.2 + 10529 0.66 0.492069
Target:  5'- -gAGCCGccgacauauuccuUGCGCgGgUUGUCgGCCGUCu -3'
miRNA:   3'- agUCGGU-------------AUGCG-CgAGCAGgCGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.