miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24269 5' -53.7 NC_005263.2 + 14804 0.66 0.823259
Target:  5'- gCCGuuCGuGCGCGGcacuguugccgGGUCGGAguucaGCCUGg -3'
miRNA:   3'- -GGCu-GCuUGUGCU-----------UCAGCCUg----CGGAC- -5'
24269 5' -53.7 NC_005263.2 + 44312 0.66 0.823259
Target:  5'- aUCGACacuGACGCGAuGGUCGG-CGUgUGg -3'
miRNA:   3'- -GGCUGc--UUGUGCU-UCAGCCuGCGgAC- -5'
24269 5' -53.7 NC_005263.2 + 32528 0.66 0.823259
Target:  5'- aCGuCGAACGCGGcgacuGUCGGcAgGCCg- -3'
miRNA:   3'- gGCuGCUUGUGCUu----CAGCC-UgCGGac -5'
24269 5' -53.7 NC_005263.2 + 20182 0.66 0.823259
Target:  5'- aCGACGAGCGCGc---CGGgcgacGCGCCg- -3'
miRNA:   3'- gGCUGCUUGUGCuucaGCC-----UGCGGac -5'
24269 5' -53.7 NC_005263.2 + 4102 0.66 0.823259
Target:  5'- gCCGAgCGGACGCGAcaGGUCGucGAauuUGCCg- -3'
miRNA:   3'- -GGCU-GCUUGUGCU--UCAGC--CU---GCGGac -5'
24269 5' -53.7 NC_005263.2 + 12075 0.66 0.813984
Target:  5'- -aGACGGGCGCGAGuaccuuGUCGucGCGgCCUGg -3'
miRNA:   3'- ggCUGCUUGUGCUU------CAGCc-UGC-GGAC- -5'
24269 5' -53.7 NC_005263.2 + 35390 0.66 0.813984
Target:  5'- gCGGCuGAACACcGAGcCGGACgGCCc- -3'
miRNA:   3'- gGCUG-CUUGUGcUUCaGCCUG-CGGac -5'
24269 5' -53.7 NC_005263.2 + 41153 0.66 0.813984
Target:  5'- aCCGGCGuucGCGCGgcGU-GGGCgGCCg- -3'
miRNA:   3'- -GGCUGCu--UGUGCuuCAgCCUG-CGGac -5'
24269 5' -53.7 NC_005263.2 + 44537 0.66 0.813984
Target:  5'- gUGGCGAACgAUGuGGUCGGccgACGCgCUGc -3'
miRNA:   3'- gGCUGCUUG-UGCuUCAGCC---UGCG-GAC- -5'
24269 5' -53.7 NC_005263.2 + 32880 0.66 0.804517
Target:  5'- gCCGGCGGGCgGCGAGuuucguggcGUCGG-CGUCg- -3'
miRNA:   3'- -GGCUGCUUG-UGCUU---------CAGCCuGCGGac -5'
24269 5' -53.7 NC_005263.2 + 3188 0.66 0.804517
Target:  5'- gCG-UGAGCACGAGGcCGGugaGCCg- -3'
miRNA:   3'- gGCuGCUUGUGCUUCaGCCug-CGGac -5'
24269 5' -53.7 NC_005263.2 + 26792 0.66 0.803561
Target:  5'- aCCGACGGcguucgugaacccGCACGucgcguAGUUGG-CGCCc- -3'
miRNA:   3'- -GGCUGCU-------------UGUGCu-----UCAGCCuGCGGac -5'
24269 5' -53.7 NC_005263.2 + 8682 0.66 0.801642
Target:  5'- cCCGACGAACcggucgACGAcaggugcggcgacaGGUCGGcCGCg-- -3'
miRNA:   3'- -GGCUGCUUG------UGCU--------------UCAGCCuGCGgac -5'
24269 5' -53.7 NC_005263.2 + 22608 0.66 0.79487
Target:  5'- gCCGACcAugACGAAcguccaaucGUCGGACaGCCc- -3'
miRNA:   3'- -GGCUGcUugUGCUU---------CAGCCUG-CGGac -5'
24269 5' -53.7 NC_005263.2 + 28763 0.66 0.79487
Target:  5'- cUCGACGAAgGUGuaaauGUCGGGCuCCUGg -3'
miRNA:   3'- -GGCUGCUUgUGCuu---CAGCCUGcGGAC- -5'
24269 5' -53.7 NC_005263.2 + 41513 0.66 0.79487
Target:  5'- aCGGCGAGCuCGAGaaaUCGGAgCGCgUGu -3'
miRNA:   3'- gGCUGCUUGuGCUUc--AGCCU-GCGgAC- -5'
24269 5' -53.7 NC_005263.2 + 951 0.66 0.79487
Target:  5'- cCCG-CGAGCgGCGAcguAGcggCGGuCGCCUGc -3'
miRNA:   3'- -GGCuGCUUG-UGCU---UCa--GCCuGCGGAC- -5'
24269 5' -53.7 NC_005263.2 + 6769 0.66 0.791942
Target:  5'- gCCgGGCGAGCucggccucguCGAAGUCGccgcccuucgucuuGACGCCUu -3'
miRNA:   3'- -GG-CUGCUUGu---------GCUUCAGC--------------CUGCGGAc -5'
24269 5' -53.7 NC_005263.2 + 36135 0.66 0.785052
Target:  5'- cUCGAuCGAGCGC-AAGUaCGGGCGCg-- -3'
miRNA:   3'- -GGCU-GCUUGUGcUUCA-GCCUGCGgac -5'
24269 5' -53.7 NC_005263.2 + 42803 0.66 0.785052
Target:  5'- gCGAaagaccCGAACGCcGAGUaagCGaGACGCCUGa -3'
miRNA:   3'- gGCU------GCUUGUGcUUCA---GC-CUGCGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.