miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24274 3' -59.1 NC_005263.2 + 45158 0.65 0.476362
Target:  5'- ---aCGCUCGCgcaGCUGCAGGGcuacagcGGCACg -3'
miRNA:   3'- agcaGUGGGCGg--CGACGUCUU-------CCGUG- -5'
24274 3' -59.1 NC_005263.2 + 5786 0.65 0.476362
Target:  5'- gUCGcgCACgCGCCGCUGCGccgucucGAAGuGCuCg -3'
miRNA:   3'- -AGCa-GUGgGCGGCGACGU-------CUUC-CGuG- -5'
24274 3' -59.1 NC_005263.2 + 47565 0.66 0.457437
Target:  5'- aCGUagCAUgCGCCacCUGCGGgcGGCGCu -3'
miRNA:   3'- aGCA--GUGgGCGGc-GACGUCuuCCGUG- -5'
24274 3' -59.1 NC_005263.2 + 27287 0.66 0.456452
Target:  5'- gCGagGCCgaGCCGCgccUGCAGAAauaccacGGCGCg -3'
miRNA:   3'- aGCagUGGg-CGGCG---ACGUCUU-------CCGUG- -5'
24274 3' -59.1 NC_005263.2 + 7208 0.66 0.446666
Target:  5'- -aGUCGCgcgaccaUCGCCgGCgacCAGAAGGCGCg -3'
miRNA:   3'- agCAGUG-------GGCGG-CGac-GUCUUCCGUG- -5'
24274 3' -59.1 NC_005263.2 + 40838 0.66 0.43796
Target:  5'- aUGUCGCUCGCCccgucgauggaGCUgaucaaGCAGAacgucgaagAGGCGCg -3'
miRNA:   3'- aGCAGUGGGCGG-----------CGA------CGUCU---------UCCGUG- -5'
24274 3' -59.1 NC_005263.2 + 11805 0.66 0.428401
Target:  5'- aCGUCGCgUGUCGCUGCAuGucguGGCuCg -3'
miRNA:   3'- aGCAGUGgGCGGCGACGU-Cuu--CCGuG- -5'
24274 3' -59.1 NC_005263.2 + 27217 0.66 0.428401
Target:  5'- gUCGUUGCaCCGCCGCUcgugaGCGuGAucGCGCc -3'
miRNA:   3'- -AGCAGUG-GGCGGCGA-----CGU-CUucCGUG- -5'
24274 3' -59.1 NC_005263.2 + 44192 0.66 0.428401
Target:  5'- ----gGCCUGCCGgUGCAGAaagacaccgaGGGUGCg -3'
miRNA:   3'- agcagUGGGCGGCgACGUCU----------UCCGUG- -5'
24274 3' -59.1 NC_005263.2 + 5473 0.66 0.428401
Target:  5'- aCGUCgGCgCUGCUucguGCUGCucgacAGggGGCGCg -3'
miRNA:   3'- aGCAG-UG-GGCGG----CGACG-----UCuuCCGUG- -5'
24274 3' -59.1 NC_005263.2 + 12323 0.67 0.418967
Target:  5'- gCGUUACCUGCU-CUGCuau-GGCACg -3'
miRNA:   3'- aGCAGUGGGCGGcGACGucuuCCGUG- -5'
24274 3' -59.1 NC_005263.2 + 43928 0.67 0.40966
Target:  5'- -aG-CACaCGCCGCUGCAGcacgagcgcGGCGCg -3'
miRNA:   3'- agCaGUGgGCGGCGACGUCuu-------CCGUG- -5'
24274 3' -59.1 NC_005263.2 + 9555 0.67 0.40966
Target:  5'- gCGgCGCUCGCgGCuUGcCAGgcGGCGCg -3'
miRNA:   3'- aGCaGUGGGCGgCG-AC-GUCuuCCGUG- -5'
24274 3' -59.1 NC_005263.2 + 20529 0.67 0.40966
Target:  5'- uUCGUCGaugugCUGCCGCUGCucgaAGAAacGGaCACg -3'
miRNA:   3'- -AGCAGUg----GGCGGCGACG----UCUU--CC-GUG- -5'
24274 3' -59.1 NC_005263.2 + 44759 0.67 0.40966
Target:  5'- -gGUCGCUCGaCCGCgcgcgGCGccGgcGGCGCg -3'
miRNA:   3'- agCAGUGGGC-GGCGa----CGU--CuuCCGUG- -5'
24274 3' -59.1 NC_005263.2 + 1453 0.67 0.400483
Target:  5'- uUCGcggCGCUCGCggCGCUGCAGcaugaacagcAGGCGCu -3'
miRNA:   3'- -AGCa--GUGGGCG--GCGACGUCu---------UCCGUG- -5'
24274 3' -59.1 NC_005263.2 + 3995 0.67 0.399572
Target:  5'- gCGUUAa--GCUGCUGCGugaccucGAAGGCGCa -3'
miRNA:   3'- aGCAGUgggCGGCGACGU-------CUUCCGUG- -5'
24274 3' -59.1 NC_005263.2 + 198 0.67 0.391437
Target:  5'- cCGUgCGCCCgGCCGCU-UGGuuGGCACc -3'
miRNA:   3'- aGCA-GUGGG-CGGCGAcGUCuuCCGUG- -5'
24274 3' -59.1 NC_005263.2 + 7030 0.67 0.391437
Target:  5'- aUGUCGCgCGCCGa--CGGAuGGCGCa -3'
miRNA:   3'- aGCAGUGgGCGGCgacGUCUuCCGUG- -5'
24274 3' -59.1 NC_005263.2 + 29490 0.67 0.373751
Target:  5'- gUUGcCACCugccgcgaaCGCCGCUGCGGcguccgucGGCGCg -3'
miRNA:   3'- -AGCaGUGG---------GCGGCGACGUCuu------CCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.