miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24280 5' -55.3 NC_005263.2 + 913 0.67 0.534652
Target:  5'- gUUgGUCGGCAUCGCGUccUCGuAGCGu-- -3'
miRNA:   3'- -AAgCAGCUGUAGCGCG--AGC-UCGUcaa -5'
24280 5' -55.3 NC_005263.2 + 3770 0.68 0.491621
Target:  5'- -aUGUCGACGUCGCGUUCuGGuCGGc- -3'
miRNA:   3'- aaGCAGCUGUAGCGCGAGcUC-GUCaa -5'
24280 5' -55.3 NC_005263.2 + 4722 0.67 0.578938
Target:  5'- cUCGUCcggguACGUCGCGCccgCGAGCAc-- -3'
miRNA:   3'- aAGCAGc----UGUAGCGCGa--GCUCGUcaa -5'
24280 5' -55.3 NC_005263.2 + 6609 0.72 0.314376
Target:  5'- aUCGcguUCGGCggCGCGCUCGGcGCGGUc -3'
miRNA:   3'- aAGC---AGCUGuaGCGCGAGCU-CGUCAa -5'
24280 5' -55.3 NC_005263.2 + 10207 0.66 0.657835
Target:  5'- cUCGcCGGCcUCGgGCUCGAGUccAGa- -3'
miRNA:   3'- aAGCaGCUGuAGCgCGAGCUCG--UCaa -5'
24280 5' -55.3 NC_005263.2 + 10330 0.69 0.460425
Target:  5'- cUCGUCGAUcUCGCGCaggCGcGGCAGc- -3'
miRNA:   3'- aAGCAGCUGuAGCGCGa--GC-UCGUCaa -5'
24280 5' -55.3 NC_005263.2 + 13837 0.68 0.512951
Target:  5'- cUUCGU--GCAUCGCGCgguacUCGGGCAGc- -3'
miRNA:   3'- -AAGCAgcUGUAGCGCG-----AGCUCGUCaa -5'
24280 5' -55.3 NC_005263.2 + 16596 0.67 0.578938
Target:  5'- gUUCGcCGGgcUCGCGCgCGAGCAGc- -3'
miRNA:   3'- -AAGCaGCUguAGCGCGaGCUCGUCaa -5'
24280 5' -55.3 NC_005263.2 + 17008 0.66 0.657835
Target:  5'- -gUGUCGAagcguUCGUaucGCUCGAGCAGc- -3'
miRNA:   3'- aaGCAGCUgu---AGCG---CGAGCUCGUCaa -5'
24280 5' -55.3 NC_005263.2 + 17153 0.67 0.590147
Target:  5'- --gGUCGACGUCGCgguGUUCGgcuGGCAGa- -3'
miRNA:   3'- aagCAGCUGUAGCG---CGAGC---UCGUCaa -5'
24280 5' -55.3 NC_005263.2 + 17395 0.68 0.523759
Target:  5'- -cCGgcgCGGCcgCGCGCcuggCGGGCGGUg -3'
miRNA:   3'- aaGCa--GCUGuaGCGCGa---GCUCGUCAa -5'
24280 5' -55.3 NC_005263.2 + 18428 0.66 0.612666
Target:  5'- cUUCGUCGGCGaUGaacCGCUCGAGguGc- -3'
miRNA:   3'- -AAGCAGCUGUaGC---GCGAGCUCguCaa -5'
24280 5' -55.3 NC_005263.2 + 19465 0.77 0.151412
Target:  5'- cUCG-CGGCGUUccgcacgGCGCUCGAGCAGUa -3'
miRNA:   3'- aAGCaGCUGUAG-------CGCGAGCUCGUCAa -5'
24280 5' -55.3 NC_005263.2 + 19608 1.02 0.002099
Target:  5'- cUUCGUCGACAUCGCGCUCGAGCAGUUc -3'
miRNA:   3'- -AAGCAGCUGUAGCGCGAGCUCGUCAA- -5'
24280 5' -55.3 NC_005263.2 + 22552 0.66 0.635257
Target:  5'- -aCGcCGACGUCGCGCUCGcgaucaacucgaAGCu--- -3'
miRNA:   3'- aaGCaGCUGUAGCGCGAGC------------UCGucaa -5'
24280 5' -55.3 NC_005263.2 + 27428 0.69 0.440221
Target:  5'- -cUGUCG-CGUCGCGCUCG-GCAa-- -3'
miRNA:   3'- aaGCAGCuGUAGCGCGAGCuCGUcaa -5'
24280 5' -55.3 NC_005263.2 + 28272 0.7 0.401382
Target:  5'- aUCGUCGAUcgCGCGCgacucaccUUGuGCAGUa -3'
miRNA:   3'- aAGCAGCUGuaGCGCG--------AGCuCGUCAa -5'
24280 5' -55.3 NC_005263.2 + 28529 0.66 0.646553
Target:  5'- cUUCGguUCGACGcCGgGCUCGAGCu--- -3'
miRNA:   3'- -AAGC--AGCUGUaGCgCGAGCUCGucaa -5'
24280 5' -55.3 NC_005263.2 + 29307 0.66 0.612666
Target:  5'- --gGUCGGCAugcgcaUCGCGCgcggCGAGCAc-- -3'
miRNA:   3'- aagCAGCUGU------AGCGCGa---GCUCGUcaa -5'
24280 5' -55.3 NC_005263.2 + 30804 0.66 0.646553
Target:  5'- cUCGgCGGCGaCGUGCUCG-GCGGa- -3'
miRNA:   3'- aAGCaGCUGUaGCGCGAGCuCGUCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.