miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24282 3' -47.7 NC_005263.2 + 12674 0.66 0.984887
Target:  5'- gCGCGcCGGggucGUCGUUCgcGUCGAGcUUGCc -3'
miRNA:   3'- -GUGCaGCU----CAGCAAG--UAGCUUcAACG- -5'
24282 3' -47.7 NC_005263.2 + 20796 0.66 0.980483
Target:  5'- gCGCGUCGGGUCGcgCcgUGGuauuucugcAGgcGCg -3'
miRNA:   3'- -GUGCAGCUCAGCaaGuaGCU---------UCaaCG- -5'
24282 3' -47.7 NC_005263.2 + 41163 0.66 0.977952
Target:  5'- gCGCGgcgUGGG-CGgccgUCGUCGAuacGUUGCg -3'
miRNA:   3'- -GUGCa--GCUCaGCa---AGUAGCUu--CAACG- -5'
24282 3' -47.7 NC_005263.2 + 33241 0.67 0.961581
Target:  5'- uGC-UCGAGUCG---AUCGAuGUUGCg -3'
miRNA:   3'- gUGcAGCUCAGCaagUAGCUuCAACG- -5'
24282 3' -47.7 NC_005263.2 + 33186 0.68 0.957076
Target:  5'- gAUGUCGAGUgGUUCG-CGAucGGUcaggaaugccacgUGCa -3'
miRNA:   3'- gUGCAGCUCAgCAAGUaGCU--UCA-------------ACG- -5'
24282 3' -47.7 NC_005263.2 + 23051 0.68 0.94847
Target:  5'- --gGUCGAcGUCGggaUCGUCGu-GUUGCc -3'
miRNA:   3'- gugCAGCU-CAGCa--AGUAGCuuCAACG- -5'
24282 3' -47.7 NC_005263.2 + 22332 0.69 0.926822
Target:  5'- gACGUCGAGUCGcgCAgugaguUCGAgacgcGGcgGCa -3'
miRNA:   3'- gUGCAGCUCAGCaaGU------AGCU-----UCaaCG- -5'
24282 3' -47.7 NC_005263.2 + 47581 0.69 0.926822
Target:  5'- cUACGUCGAGUCGaaCGUC-AAGcUUGg -3'
miRNA:   3'- -GUGCAGCUCAGCaaGUAGcUUC-AACg -5'
24282 3' -47.7 NC_005263.2 + 6765 0.69 0.914168
Target:  5'- gCGCGccgggCGAGcUCGgccUCGUCGAAGUcGCc -3'
miRNA:   3'- -GUGCa----GCUC-AGCa--AGUAGCUUCAaCG- -5'
24282 3' -47.7 NC_005263.2 + 22214 0.7 0.907385
Target:  5'- gUACGUCGcggccGUCGccggCGUCGGcccGGUUGCg -3'
miRNA:   3'- -GUGCAGCu----CAGCaa--GUAGCU---UCAACG- -5'
24282 3' -47.7 NC_005263.2 + 17623 0.7 0.885247
Target:  5'- gGCG-CGGGUCGcgCAUCGA---UGCg -3'
miRNA:   3'- gUGCaGCUCAGCaaGUAGCUucaACG- -5'
24282 3' -47.7 NC_005263.2 + 4215 0.74 0.695987
Target:  5'- gCGCGUCGA--CGggUCGUCGAGGUaGCg -3'
miRNA:   3'- -GUGCAGCUcaGCa-AGUAGCUUCAaCG- -5'
24282 3' -47.7 NC_005263.2 + 20511 1.13 0.003522
Target:  5'- gCACGUCGAGUCGUUCAUCGAAGUUGCu -3'
miRNA:   3'- -GUGCAGCUCAGCAAGUAGCUUCAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.