miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24282 5' -55.8 NC_005263.2 + 45830 0.66 0.678121
Target:  5'- -cACGACCU-GCCGaCGGCGaacgCGcUGCg -3'
miRNA:   3'- caUGUUGGAgCGGC-GCUGCga--GC-ACG- -5'
24282 5' -55.8 NC_005263.2 + 6983 0.66 0.678121
Target:  5'- ---gGAUCUCGCgGCGAaGUUCG-GCg -3'
miRNA:   3'- caugUUGGAGCGgCGCUgCGAGCaCG- -5'
24282 5' -55.8 NC_005263.2 + 47345 0.66 0.677027
Target:  5'- cGUACAucgcgcugcGCgUCGCCgaaauggGCGGCGCguUCGaUGCg -3'
miRNA:   3'- -CAUGU---------UGgAGCGG-------CGCUGCG--AGC-ACG- -5'
24282 5' -55.8 NC_005263.2 + 23992 0.66 0.67155
Target:  5'- -gGCGGCUacccgaaaggCGCCGCGcugcaaagugccgacGCGCUCG-GCa -3'
miRNA:   3'- caUGUUGGa---------GCGGCGC---------------UGCGAGCaCG- -5'
24282 5' -55.8 NC_005263.2 + 3007 0.66 0.667162
Target:  5'- -gGCGcAUC-CGCCGCGACGUagCGcGCg -3'
miRNA:   3'- caUGU-UGGaGCGGCGCUGCGa-GCaCG- -5'
24282 5' -55.8 NC_005263.2 + 15613 0.66 0.667162
Target:  5'- aUACGAa--CGCgGCGAaGUUCGUGCg -3'
miRNA:   3'- cAUGUUggaGCGgCGCUgCGAGCACG- -5'
24282 5' -55.8 NC_005263.2 + 45395 0.66 0.656171
Target:  5'- -aACAAUCUCGCCGaCGAa-CUCG-GUc -3'
miRNA:   3'- caUGUUGGAGCGGC-GCUgcGAGCaCG- -5'
24282 5' -55.8 NC_005263.2 + 38984 0.66 0.656171
Target:  5'- -cGCGACCggcaaUCGCCGCuucAUGCcCGUGUu -3'
miRNA:   3'- caUGUUGG-----AGCGGCGc--UGCGaGCACG- -5'
24282 5' -55.8 NC_005263.2 + 20442 0.66 0.656171
Target:  5'- -gGCGGCCgugcuugcCGCCGCcgaGACGUUCGUc- -3'
miRNA:   3'- caUGUUGGa-------GCGGCG---CUGCGAGCAcg -5'
24282 5' -55.8 NC_005263.2 + 18636 0.66 0.656171
Target:  5'- -gGCAACCcgggCGCCGCuGGCGgUaCGcUGCc -3'
miRNA:   3'- caUGUUGGa---GCGGCG-CUGCgA-GC-ACG- -5'
24282 5' -55.8 NC_005263.2 + 46597 0.66 0.656171
Target:  5'- cUGCAGgcugaCUCGCCGU--CGCUCGcGCa -3'
miRNA:   3'- cAUGUUg----GAGCGGCGcuGCGAGCaCG- -5'
24282 5' -55.8 NC_005263.2 + 14194 0.66 0.656171
Target:  5'- -gGCAGCaagCGuuCCGCGACGg-CGUGCc -3'
miRNA:   3'- caUGUUGga-GC--GGCGCUGCgaGCACG- -5'
24282 5' -55.8 NC_005263.2 + 34439 0.66 0.656171
Target:  5'- -aAC-GCCUgCGCauuCGCGACGCg-GUGCg -3'
miRNA:   3'- caUGuUGGA-GCG---GCGCUGCGagCACG- -5'
24282 5' -55.8 NC_005263.2 + 41243 0.66 0.656171
Target:  5'- -gACAauGCCgUCGCCGCaaucCGCUCGaugGCc -3'
miRNA:   3'- caUGU--UGG-AGCGGCGcu--GCGAGCa--CG- -5'
24282 5' -55.8 NC_005263.2 + 47500 0.66 0.656171
Target:  5'- --cCAGCCgauugCGCgaagcacauCGCGGCGCUCGaauaccUGCa -3'
miRNA:   3'- cauGUUGGa----GCG---------GCGCUGCGAGC------ACG- -5'
24282 5' -55.8 NC_005263.2 + 10901 0.66 0.651768
Target:  5'- -aGCGGCguaUCGCCGCGcugggggaugccgcACGUgaucgcgUCGUGCg -3'
miRNA:   3'- caUGUUGg--AGCGGCGC--------------UGCG-------AGCACG- -5'
24282 5' -55.8 NC_005263.2 + 19601 0.66 0.645157
Target:  5'- aGUuCAACUUCGUCGacaucGCGCUCGaGCa -3'
miRNA:   3'- -CAuGUUGGAGCGGCgc---UGCGAGCaCG- -5'
24282 5' -55.8 NC_005263.2 + 7130 0.66 0.645157
Target:  5'- cGUGCGACCgacuguggCGUCGCGAaaaUGUauUgGUGCa -3'
miRNA:   3'- -CAUGUUGGa-------GCGGCGCU---GCG--AgCACG- -5'
24282 5' -55.8 NC_005263.2 + 16201 0.66 0.645157
Target:  5'- -gACGAaCUgGUCGUGACGCUCGa-- -3'
miRNA:   3'- caUGUUgGAgCGGCGCUGCGAGCacg -5'
24282 5' -55.8 NC_005263.2 + 9173 0.66 0.645157
Target:  5'- cGUGcCGAUCagCGCgaaGCGACGCggGUGCg -3'
miRNA:   3'- -CAU-GUUGGa-GCGg--CGCUGCGagCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.