miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24282 5' -55.8 NC_005263.2 + 20546 1.11 0.000594
Target:  5'- cGUACAACCUCGCCGCGACGCUCGUGCc -3'
miRNA:   3'- -CAUGUUGGAGCGGCGCUGCGAGCACG- -5'
24282 5' -55.8 NC_005263.2 + 32496 0.83 0.063595
Target:  5'- -cACgAACUUCGCCGCGuucguauCGCUCGUGCa -3'
miRNA:   3'- caUG-UUGGAGCGGCGCu------GCGAGCACG- -5'
24282 5' -55.8 NC_005263.2 + 47391 0.81 0.084858
Target:  5'- --uCAACCUCGCCaCGGCGCUCGcggGCg -3'
miRNA:   3'- cauGUUGGAGCGGcGCUGCGAGCa--CG- -5'
24282 5' -55.8 NC_005263.2 + 17194 0.78 0.126214
Target:  5'- cGUAC-GCCgUCGCCGCGcuCGaCUCGUGCa -3'
miRNA:   3'- -CAUGuUGG-AGCGGCGCu-GC-GAGCACG- -5'
24282 5' -55.8 NC_005263.2 + 9527 0.77 0.157588
Target:  5'- cGUGCGGCCgugCGCggcagcgaccgaCGCGGCGCUCGcgGCu -3'
miRNA:   3'- -CAUGUUGGa--GCG------------GCGCUGCGAGCa-CG- -5'
24282 5' -55.8 NC_005263.2 + 1160 0.76 0.180628
Target:  5'- aGUGC-GCC-CGUCGCGGCGaCUUGUGCc -3'
miRNA:   3'- -CAUGuUGGaGCGGCGCUGC-GAGCACG- -5'
24282 5' -55.8 NC_005263.2 + 15391 0.75 0.217869
Target:  5'- -aGCGACCcggcCGCCGUGcauGCGCUCGUGa -3'
miRNA:   3'- caUGUUGGa---GCGGCGC---UGCGAGCACg -5'
24282 5' -55.8 NC_005263.2 + 22146 0.74 0.229655
Target:  5'- -gGCAuuCCUCGacggCGCGACGCUCGcauUGCg -3'
miRNA:   3'- caUGUu-GGAGCg---GCGCUGCGAGC---ACG- -5'
24282 5' -55.8 NC_005263.2 + 9798 0.74 0.241975
Target:  5'- -gGC-GCCUCGCCGCG-UGCggcauagccuUCGUGCg -3'
miRNA:   3'- caUGuUGGAGCGGCGCuGCG----------AGCACG- -5'
24282 5' -55.8 NC_005263.2 + 33188 0.74 0.261481
Target:  5'- cUACAACCcggacUUGCCGCuuGGCGCacUCGUGCc -3'
miRNA:   3'- cAUGUUGG-----AGCGGCG--CUGCG--AGCACG- -5'
24282 5' -55.8 NC_005263.2 + 4164 0.73 0.282249
Target:  5'- uGUACAGCg-CGCCGC---GCUCGUGCu -3'
miRNA:   3'- -CAUGUUGgaGCGGCGcugCGAGCACG- -5'
24282 5' -55.8 NC_005263.2 + 46171 0.73 0.282249
Target:  5'- -gGCGucGCCggUGCCgGCG-CGCUCGUGCa -3'
miRNA:   3'- caUGU--UGGa-GCGG-CGCuGCGAGCACG- -5'
24282 5' -55.8 NC_005263.2 + 19741 0.73 0.289456
Target:  5'- aUGCGAUCggCGCUggcgcgcugGCGGCGCUCGUGg -3'
miRNA:   3'- cAUGUUGGa-GCGG---------CGCUGCGAGCACg -5'
24282 5' -55.8 NC_005263.2 + 20737 0.73 0.289456
Target:  5'- --cCGGCCgcCGCCGCGcCGCUCGcugGCg -3'
miRNA:   3'- cauGUUGGa-GCGGCGCuGCGAGCa--CG- -5'
24282 5' -55.8 NC_005263.2 + 39112 0.72 0.319726
Target:  5'- -cGCGACUcgugCGCCGUgcgucGGCGCUCGUGa -3'
miRNA:   3'- caUGUUGGa---GCGGCG-----CUGCGAGCACg -5'
24282 5' -55.8 NC_005263.2 + 44005 0.72 0.343947
Target:  5'- -gACGACCU-GUCGCGucCGCUCG-GCa -3'
miRNA:   3'- caUGUUGGAgCGGCGCu-GCGAGCaCG- -5'
24282 5' -55.8 NC_005263.2 + 31012 0.72 0.343947
Target:  5'- cGUGCAGCagUGCgGCGAgGCgcggCGUGCg -3'
miRNA:   3'- -CAUGUUGgaGCGgCGCUgCGa---GCACG- -5'
24282 5' -55.8 NC_005263.2 + 46771 0.72 0.343947
Target:  5'- cUGCAACCg-GCCGUGAUcguGUUCGUGUu -3'
miRNA:   3'- cAUGUUGGagCGGCGCUG---CGAGCACG- -5'
24282 5' -55.8 NC_005263.2 + 22773 0.71 0.352309
Target:  5'- -gGCGACCU-GCC-CGAgGCUCGUGa -3'
miRNA:   3'- caUGUUGGAgCGGcGCUgCGAGCACg -5'
24282 5' -55.8 NC_005263.2 + 45231 0.71 0.352309
Target:  5'- --uCAGCCUCGCCgcuGCGACG-UCGUucGCg -3'
miRNA:   3'- cauGUUGGAGCGG---CGCUGCgAGCA--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.