Results 1 - 20 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24282 | 5' | -55.8 | NC_005263.2 | + | 20546 | 1.11 | 0.000594 |
Target: 5'- cGUACAACCUCGCCGCGACGCUCGUGCc -3' miRNA: 3'- -CAUGUUGGAGCGGCGCUGCGAGCACG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 33907 | 0.7 | 0.43383 |
Target: 5'- -aACGGCacgcCGUCGCGgaACGCUUGUGCc -3' miRNA: 3'- caUGUUGga--GCGGCGC--UGCGAGCACG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 19660 | 0.7 | 0.447468 |
Target: 5'- aUGCGcuauGCCUaCGCCGCGcugcccgcgacguucACGCgCGUGCc -3' miRNA: 3'- cAUGU----UGGA-GCGGCGC---------------UGCGaGCACG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 6983 | 0.66 | 0.678121 |
Target: 5'- ---gGAUCUCGCgGCGAaGUUCG-GCg -3' miRNA: 3'- caugUUGGAGCGgCGCUgCGAGCaCG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 9798 | 0.74 | 0.241975 |
Target: 5'- -gGC-GCCUCGCCGCG-UGCggcauagccuUCGUGCg -3' miRNA: 3'- caUGuUGGAGCGGCGCuGCG----------AGCACG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 4164 | 0.73 | 0.282249 |
Target: 5'- uGUACAGCg-CGCCGC---GCUCGUGCu -3' miRNA: 3'- -CAUGUUGgaGCGGCGcugCGAGCACG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 20737 | 0.73 | 0.289456 |
Target: 5'- --cCGGCCgcCGCCGCGcCGCUCGcugGCg -3' miRNA: 3'- cauGUUGGa-GCGGCGCuGCGAGCa--CG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 39112 | 0.72 | 0.319726 |
Target: 5'- -cGCGACUcgugCGCCGUgcgucGGCGCUCGUGa -3' miRNA: 3'- caUGUUGGa---GCGGCG-----CUGCGAGCACg -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 2273 | 0.71 | 0.378248 |
Target: 5'- -cGCAGCgcgUUCGCCGuCGGCaGgUCGUGCg -3' miRNA: 3'- caUGUUG---GAGCGGC-GCUG-CgAGCACG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 4319 | 0.7 | 0.424238 |
Target: 5'- uGUGUGAUCgCGCCGCGcACGauaUCGUGCa -3' miRNA: 3'- -CAUGUUGGaGCGGCGC-UGCg--AGCACG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 23810 | 0.71 | 0.387175 |
Target: 5'- -gGCGGCCgucuugaucgUCGCCGCGaaaGCGCcggUCGUGUu -3' miRNA: 3'- caUGUUGG----------AGCGGCGC---UGCG---AGCACG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 22773 | 0.71 | 0.352309 |
Target: 5'- -gGCGACCU-GCC-CGAgGCUCGUGa -3' miRNA: 3'- caUGUUGGAgCGGcGCUgCGAGCACg -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 17194 | 0.78 | 0.126214 |
Target: 5'- cGUAC-GCCgUCGCCGCGcuCGaCUCGUGCa -3' miRNA: 3'- -CAUGuUGG-AGCGGCGCu-GC-GAGCACG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 5906 | 0.7 | 0.39624 |
Target: 5'- -cACAACagCGCC-CGGCGCggCGUGCg -3' miRNA: 3'- caUGUUGgaGCGGcGCUGCGa-GCACG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 9527 | 0.77 | 0.157588 |
Target: 5'- cGUGCGGCCgugCGCggcagcgaccgaCGCGGCGCUCGcgGCu -3' miRNA: 3'- -CAUGUUGGa--GCG------------GCGCUGCGAGCa-CG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 31012 | 0.72 | 0.343947 |
Target: 5'- cGUGCAGCagUGCgGCGAgGCgcggCGUGCg -3' miRNA: 3'- -CAUGUUGgaGCGgCGCUgCGa---GCACG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 30357 | 0.7 | 0.39624 |
Target: 5'- -cGCGGCCgcgcUGCCGcCGGCGCcgaGUGCg -3' miRNA: 3'- caUGUUGGa---GCGGC-GCUGCGag-CACG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 44543 | 0.7 | 0.443547 |
Target: 5'- -aAgGAgUaCGCCGCGACGCUUG-GCg -3' miRNA: 3'- caUgUUgGaGCGGCGCUGCGAGCaCG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 22146 | 0.74 | 0.229655 |
Target: 5'- -gGCAuuCCUCGacggCGCGACGCUCGcauUGCg -3' miRNA: 3'- caUGUu-GGAGCg---GCGCUGCGAGC---ACG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 19741 | 0.73 | 0.289456 |
Target: 5'- aUGCGAUCggCGCUggcgcgcugGCGGCGCUCGUGg -3' miRNA: 3'- cAUGUUGGa-GCGG---------CGCUGCGAGCACg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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