Results 21 - 40 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24282 | 5' | -55.8 | NC_005263.2 | + | 37243 | 0.69 | 0.49387 |
Target: 5'- -cGguGCCgaguucCGCCGCGACGC-CGUaGCc -3' miRNA: 3'- caUguUGGa-----GCGGCGCUGCGaGCA-CG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 19660 | 0.7 | 0.447468 |
Target: 5'- aUGCGcuauGCCUaCGCCGCGcugcccgcgacguucACGCgCGUGCc -3' miRNA: 3'- cAUGU----UGGA-GCGGCGC---------------UGCGaGCACG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 22773 | 0.71 | 0.352309 |
Target: 5'- -gGCGACCU-GCC-CGAgGCUCGUGa -3' miRNA: 3'- caUGUUGGAgCGGcGCUgCGAGCACg -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 22146 | 0.74 | 0.229655 |
Target: 5'- -gGCAuuCCUCGacggCGCGACGCUCGcauUGCg -3' miRNA: 3'- caUGUu-GGAGCg---GCGCUGCGAGC---ACG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 2746 | 0.67 | 0.601083 |
Target: 5'- -cACAGCCgagaucgcggcCGCCGUGcCGgUCGUGUu -3' miRNA: 3'- caUGUUGGa----------GCGGCGCuGCgAGCACG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 46655 | 0.68 | 0.557428 |
Target: 5'- cUGCAgcGCCgcgagCGCCGCGAaGcCUCGcGCg -3' miRNA: 3'- cAUGU--UGGa----GCGGCGCUgC-GAGCaCG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 33907 | 0.7 | 0.43383 |
Target: 5'- -aACGGCacgcCGUCGCGgaACGCUUGUGCc -3' miRNA: 3'- caUGUUGga--GCGGCGC--UGCGAGCACG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 9527 | 0.77 | 0.157588 |
Target: 5'- cGUGCGGCCgugCGCggcagcgaccgaCGCGGCGCUCGcgGCu -3' miRNA: 3'- -CAUGUUGGa--GCG------------GCGCUGCGAGCa-CG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 20645 | 0.68 | 0.557428 |
Target: 5'- ---uGGCCgcagugGCCGCGcCGCUCGUcGCg -3' miRNA: 3'- caugUUGGag----CGGCGCuGCGAGCA-CG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 17194 | 0.78 | 0.126214 |
Target: 5'- cGUAC-GCCgUCGCCGCGcuCGaCUCGUGCa -3' miRNA: 3'- -CAUGuUGG-AGCGGCGCu-GC-GAGCACG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 44543 | 0.7 | 0.443547 |
Target: 5'- -aAgGAgUaCGCCGCGACGCUUG-GCg -3' miRNA: 3'- caUgUUgGaGCGGCGCUGCGAGCaCG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 23596 | 0.69 | 0.49387 |
Target: 5'- aUACGuaaaUCGUCGUGACGUUCGgcgGCa -3' miRNA: 3'- cAUGUugg-AGCGGCGCUGCGAGCa--CG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 5906 | 0.7 | 0.39624 |
Target: 5'- -cACAACagCGCC-CGGCGCggCGUGCg -3' miRNA: 3'- caUGUUGgaGCGGcGCUGCGa-GCACG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 2273 | 0.71 | 0.378248 |
Target: 5'- -cGCAGCgcgUUCGCCGuCGGCaGgUCGUGCg -3' miRNA: 3'- caUGUUG---GAGCGGC-GCUG-CgAGCACG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 20737 | 0.73 | 0.289456 |
Target: 5'- --cCGGCCgcCGCCGCGcCGCUCGcugGCg -3' miRNA: 3'- cauGUUGGa-GCGGCGCuGCGAGCa--CG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 9798 | 0.74 | 0.241975 |
Target: 5'- -gGC-GCCUCGCCGCG-UGCggcauagccuUCGUGCg -3' miRNA: 3'- caUGuUGGAGCGGCGCuGCG----------AGCACG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 47151 | 0.67 | 0.612085 |
Target: 5'- -gGCGACCgccgcuacgUCGCCGCu-CGCggGUGCc -3' miRNA: 3'- caUGUUGG---------AGCGGCGcuGCGagCACG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 9894 | 0.67 | 0.601083 |
Target: 5'- --uCAugCUCGUCGuCGGCGCgCG-GCg -3' miRNA: 3'- cauGUugGAGCGGC-GCUGCGaGCaCG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 23394 | 0.67 | 0.590107 |
Target: 5'- uUGCcGCCUgCGCCGCccggcACGUUCG-GCg -3' miRNA: 3'- cAUGuUGGA-GCGGCGc----UGCGAGCaCG- -5' |
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24282 | 5' | -55.8 | NC_005263.2 | + | 29167 | 0.67 | 0.590107 |
Target: 5'- --gUAACCggcgCGCuCGa-GCGCUCGUGCc -3' miRNA: 3'- cauGUUGGa---GCG-GCgcUGCGAGCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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