Results 41 - 60 of 208 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 37718 | 0.67 | 0.193045 |
Target: 5'- cCGC-UCGC-CGGCCgGCCcggcGCGUGGCgGc -3' miRNA: 3'- -GCGuAGCGcGCCGG-CGG----CGCGCCGgC- -5' |
|||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 20391 | 0.67 | 0.168923 |
Target: 5'- uGCcUCGaccgagcaagccuaUGCGGCCGCCGgCGcCGGCgCGc -3' miRNA: 3'- gCGuAGC--------------GCGCCGGCGGC-GC-GCCG-GC- -5' |
|||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 17020 | 0.67 | 0.183606 |
Target: 5'- uCGUAUCGCuCGaGCaGCgCGuCGCGGCCa -3' miRNA: 3'- -GCGUAGCGcGC-CGgCG-GC-GCGCCGGc -5' |
|||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 23554 | 0.67 | 0.179041 |
Target: 5'- cCGUggCGCaGCcGCCGCCGCcCGcGCCGc -3' miRNA: 3'- -GCGuaGCG-CGcCGGCGGCGcGC-CGGC- -5' |
|||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 27260 | 0.67 | 0.183606 |
Target: 5'- aCGC-UCGCGUcgaauuGGcCCGaCUGCGCgaGGCCGa -3' miRNA: 3'- -GCGuAGCGCG------CC-GGC-GGCGCG--CCGGC- -5' |
|||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 26860 | 0.67 | 0.183606 |
Target: 5'- aGCAcUGCGCGGCuacuucguCGCCGgUGaCGGCUGc -3' miRNA: 3'- gCGUaGCGCGCCG--------GCGGC-GC-GCCGGC- -5' |
|||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 15321 | 0.67 | 0.183606 |
Target: 5'- gCGCGagGCGCgGGCCGacaccgagaaccCCGaCGCGGCg- -3' miRNA: 3'- -GCGUagCGCG-CCGGC------------GGC-GCGCCGgc -5' |
|||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 37335 | 0.67 | 0.180855 |
Target: 5'- aGCAgaccgCGCGCagcuuugaugccgacGGCCGCaUGCGCGuGCgCGa -3' miRNA: 3'- gCGUa----GCGCG---------------CCGGCG-GCGCGC-CG-GC- -5' |
|||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 26932 | 0.67 | 0.174577 |
Target: 5'- gCGCGUC-CGCGuCCGCCcCGUGGCg- -3' miRNA: 3'- -GCGUAGcGCGCcGGCGGcGCGCCGgc -5' |
|||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 21836 | 0.67 | 0.174136 |
Target: 5'- uCGCGg-GCGUucaggcugaucaGGUCGCCGCGUucgcgacGGCCGg -3' miRNA: 3'- -GCGUagCGCG------------CCGGCGGCGCG-------CCGGC- -5' |
|||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 39891 | 0.67 | 0.170213 |
Target: 5'- gGgGUCGC-CGGCUGUCGaaGCGGUCGu -3' miRNA: 3'- gCgUAGCGcGCCGGCGGCg-CGCCGGC- -5' |
|||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 20133 | 0.67 | 0.170213 |
Target: 5'- gGCAagCGCGacgguaCGGCCGUCGCGcCGGgCa -3' miRNA: 3'- gCGUa-GCGC------GCCGGCGGCGC-GCCgGc -5' |
|||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 43060 | 0.67 | 0.165946 |
Target: 5'- cCGaCGUCGgccaauaGuCGGCCGCCGgGCcGGCUGu -3' miRNA: 3'- -GC-GUAGCg------C-GCCGGCGGCgCG-CCGGC- -5' |
|||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 3462 | 0.67 | 0.165946 |
Target: 5'- aCGCAUCGagGCGcagcucgaucaGCUGCCGCaGCGaGUCGg -3' miRNA: 3'- -GCGUAGCg-CGC-----------CGGCGGCG-CGC-CGGC- -5' |
|||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 2272 | 0.67 | 0.17859 |
Target: 5'- gCGCAgCGCGUucGCCGUCGgcaggucgugcgcCGUGGCCGg -3' miRNA: 3'- -GCGUaGCGCGc-CGGCGGC-------------GCGCCGGC- -5' |
|||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 46502 | 0.67 | 0.179041 |
Target: 5'- gGCGUCGaaGUGuCCGCCGCGCuGCuCGg -3' miRNA: 3'- gCGUAGCg-CGCcGGCGGCGCGcCG-GC- -5' |
|||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 40804 | 0.67 | 0.174577 |
Target: 5'- gCGCAUCGCGCagaccuGGCCGCaggcaCGCGUcauGUCGc -3' miRNA: 3'- -GCGUAGCGCG------CCGGCG-----GCGCGc--CGGC- -5' |
|||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 47729 | 0.67 | 0.17859 |
Target: 5'- gGCAUCGUugGCGGuuGCCGCcuguucgcgaaagGCaucuGGCUGg -3' miRNA: 3'- gCGUAGCG--CGCCggCGGCG-------------CG----CCGGC- -5' |
|||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 7163 | 0.67 | 0.179041 |
Target: 5'- -cUAUUGCGCGGCCaucGCCGCuGCGauacCCGg -3' miRNA: 3'- gcGUAGCGCGCCGG---CGGCG-CGCc---GGC- -5' |
|||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 4656 | 0.67 | 0.179041 |
Target: 5'- gGCGaCGgGCaGGCCGgCGCGCgGGUCu -3' miRNA: 3'- gCGUaGCgCG-CCGGCgGCGCG-CCGGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home